BAC Information

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BAC

Clone NameMSMg01-339D20
Chromosome2 (Build37)
Map Location 112,075,707 - 112,076,163
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187
Downstream geneAgpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339D20.T7 (MSMg01no339_d20.b1)MSMg01-339D20.TJ (MSMg01no339_d20.g1)
ACCAG453576AG453577
length755747
length of high quality
(start - end)		571 (73 - 643)528 (58 - 585)
definitionCHROMAT_FILE: MSMg01no339_d20.b1 PHD_FILE: MSMg01no339_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:02 2005CHROMAT_FILE: MSMg01no339_d20.g1 PHD_FILE: MSMg01no339_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCANAAATCCGCGGA
ATTCATTCTGTATACCAAGCTGGCCTCAAACTCGCAGAGATCCACCTGCC
TCTGCCTTCATGCTAGGATTAAAGGCATGCACCACCACCATCCAGCCTAA
TTCCACTGTTTTTATAATCTCATTTTTTTGAGTTAAAGCAGTTCACAAAT
GCATAAACATCATTTGATTTTTATAGCCTTACTATTATTTTTGGATTTTT
ATAAAATTTTTATTCTACATGAATTCATTTTTGCCTGCATATATGTGAGT
GGACCGTGTGCGTGCTTGGTGCCTGATGAGGTAGGAAGAGGCATCAGGTT
CCCCAGAGCTGGATTTCTGGGTGGTTGGGAATCACCACATGGGTGTTGGT
AACTGAGCCTGAGTCCTCTCCAAGAGCAGCAAGGGTTTTTAATCATTGAT
CCCTCTCTCCAGCCCTCTGCACTTAATCTTTTAAACATAAACTAGCCAGT
TCAGGAAACTTTATTAAACTTGAGAATCCCCTTCATAGAGCACATATATT
AATTTACAAATTACTCTAAAAATTAAGCATACATACAGTTAACTTTCAAT
GATATACAGTTTGGCTATGTGTCCATTTACAAACAAACAAACCACAAAAC
AACAACAAACAGATCAATTCTCCCAGGGCCTATGATCACTCCCTAGTGTA
GGTTTCTGACCAGAGTTCTAGTGCTAGGCGTCTATTCCCCAACAGAGAGG
ACTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGAAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCATTCAGAATGGCTAAGATCACAAATTCAGGTGACAG
CAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGAATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTC
AGAAAATTGGACATAGTACTACCGGAGGATCCAGGAACACCTCTTCTGGG
CATATATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGGCAGAAACTGGAAAGAACCCAGA
TGTCACTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTTTGAAATTCCTAGGCA
AATGGATGGACCTGGAGGGCATTATCCTGAGTGAGGTAACCCAATCACAA
AGGGACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAAC
TTAGGAAACCCAGATATAAAATACAATTTGCTAAACCCATGAAACTCTAG
AAGAACGAAAACCAAGGGGTGGAACCCTTTCCCCTTCTTATAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_d20.b1 MSMg01no339_d20.b1 CHROMAT_FILE:
MSMg01no339_d20.b1 PHD_FILE: MSMg01no339_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:02 2005
         (571 letters)



>mm_chr2_112075707_112076677
          Length = 971

 Score =  845 bits (437), Expect = 0.0
 Identities = 452/457 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctcaaactcgcagagatccacctgcctctgccttcatgctaggattaaaggcatgcac 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gcctcaaactcccagagatccacctgcctctgccttcatgctaggattaaaggcatgcac 398

                                                                       
Query: 61  caccaccatccagcctaattccactgtttttataatctcatttttttgagttaaagcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 caccaccatccagcctaattccactgtttttataatctcatttttttgagttaaagcagt 338

                                                                       
Query: 121 tcacaaatgcataaacatcatttgatttttatagccttactattatttttggatttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcacaaatgcataaacatcatttgatttttatagccttactattatttttggatttttat 278

                                                                       
Query: 181 aaaatttttattctacatgaattcatttttgcctgcatatatgtgagtggaccgtgtgcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaaatttttattctacatgaattcatttttgcctgcatatatgtgagtggaccgtgtgcg 218

                                                                       
Query: 241 tgcttggtgcctgatgaggtaggaagaggcatcaggttccccagagctggatttctgggt 300
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 217 tgcttggtgcctgaggaggtagggagaggcatcaggttccccagagctggatttctgggt 158

                                                                       
Query: 301 ggttgggaatcaccacatgggtgttggtaactgagcctgagtcctctccaagagcagcaa 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gggtgggaatcaccacatgggtgttggtaactgagcctgagtcctctccaagagcagcaa 98

                                                                       
Query: 361 gggtttttaatcattgatccctctctccagccctctgcacttaatcttttaaacataaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  gggtttttaatcattgatccctctctccagccctctgcacttaatcttttaaacataaac 38

                                                
Query: 421 tagccagttcaggaaactttattaaacttgagaatcc 457
           ||||||||||||||| |||||||||||||||||||||
Sbjct: 37  tagccagttcaggaagctttattaaacttgagaatcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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