NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTGTACAATACTGAAAGGCTGAGAAGCACCTGAAA
AAATGTTCAACATTCTTAACCATCAGAGAAATACAAATCAAAACAATCCT
GAGATTCTACCTCACACCGGTCAGAATGGCTTAGATCAAAAATTCAGGTG
ACAGTAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAAGCTTGTACAACTACTCTGGAAATCAGCCTGGCGGTT
CCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAAGACTTGAAA
TTGTTATGTAGCATCCGAGAAAAAAATCCTAGAGTCCTGCAGAAAAACAA
GGTCTATTGTCAGATACAAGAATTCGTAAATGCACAAGTCATGGAAGCCA
GCAGTCATGCAGGTGATATATATTGCTCCCAACTATTTCTGTTTCAATGA
ATTAGTATGTTTGTGTTTACTTATATATACTAATTCATTGAAGCTGAAAC
ATTTGGAAGCAGTGGATAGACTACAGGAAAGGAAAGAATGTCAAGGAGAT
TCCTCATCAGTTTTGTATGTAGAGATTATGGTGAGGGCTCTGTTCTATGT
TTGTGGATAGTGGGAAGCAAATTCCAACAATAAATTTAAGCCTTTTTAAG
GAGGTGCATTGTCTTAAATGAGTTTTGAGGAAAGACCAATGATTG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAGAAGCACCT
GAAAGAGTGTTCCACATGCTTAATCATCAGAGAAATGCAAAACAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGAAACACTCCTCCA
TTGTTGGTGGGATTGCAAGCTTGTACCACCATTCTGGAAATCAGTCTGGT
GGTTCCTCAGAAAAATGAACATAGTACTACCAGAGTATCCCGCAATACCT
CTCCTGGGCATATATCCAGAAGATGTTCCAACCAGTAAGAAGGGCACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAGGCTGGAAAG
AACCCAGATACCCCTCAACAGAGGAATGGATACAGAANATGTGGTACATT
TACACAATGGAGTACTACTCAGCTATTTAAAAGAATGATTTTATGAAATT
CCTAGGCAAATGGGTGGACCTGGAGGGCATAATCTTGAGTGAGGAAACCA
ATCTCAAAGGAACTCCCCTAAATGGACCCCCTGATAAGGGGAATTAACCC
CAAAACTTATATACCCGAAAATAAATAAAATTTGGAAACCCTTGGAACTC
CAGAGAACAAAAACCAATGGGGAACACTTTGTCN

Query= MSMg01no339_f05.b1 MSMg01no339_f05.b1 CHROMAT_FILE:
MSMg01no339_f05.b1 PHD_FILE: MSMg01no339_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:08 2005
         (542 letters)



>mm_chr2_136391187_136392128
          Length = 942

 Score =  667 bits (345), Expect = 0.0
 Identities = 421/449 (93%), Gaps = 8/449 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  ctgagattctacctcacaccggtcagaatggcttagatcaaaaattcaggtgacagtaga 157
           ||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||| |||
Sbjct: 940 ctgagattccacctcacaccagtcaaaatggctaagatcaaaaattcaggtgacagcaga 881

                                                                       
Query: 158 tgctggcgaggatgtggagaaagaggaacactcctccattg--ttggtgggattgcaagc 215
           |||||| ||||||||||||||||||||||| ||||||||||  |||  ||||||||||||
Sbjct: 880 tgctggtgaggatgtggagaaagaggaacagtcctccattgttttg--gggattgcaagc 823

                                                                       
Query: 216 ttgtacaactactctggaaatcagcctggcggttcctcagaaaattggacatagtactac 275
           ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 822 ttgtataaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactac 763

                                                                       
Query: 276 cggaggatcccgcaagacttgaaattgttatgtagcatccgagaaaaaaatcctagagtc 335
            |||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 762 tggaggatcccacaaggcttgaaattgttatgtagcatctgagaaaaaaatcctagagtc 703

                                                                       
Query: 336 ctgcagaaaaacaaggtctattgtcagatacaagaattcgtaaatgcacaagtcatggaa 395
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 702 ctgcagaaaaacaaggtctattgtcagatacaagaattcataaatgcacaagtcatggaa 643

                                                                       
Query: 396 gccagcagtcatgcaggtgatatatattgctcccaactatttctgtttcaatgaattagt 455
           ||||||||||||||||||||||||||| ||  ||| ||||||||||||||||||||| ||
Sbjct: 642 gccagcagtcatgcaggtgatatatatcgc--ccatctatttctgtttcaatgaatttgt 585

                                                                       
Query: 456 atgtttgtgtttacttatatata--ctaattcattgaagctgaaacatttggaagcagtg 513
           |||| ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||
Sbjct: 584 atgtgtgtgtttacttatatatatactaattcattgaagcagaaacatttggaagcagtg 525

                                        
Query: 514 gatagactacaggaaaggaaagaatgtca 542
           |||||||||||||||||||||||||||||
Sbjct: 524 gatagactacaggaaaggaaagaatgtca 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)