Query= MSMg01no339_h23.b1 MSMg01no339_h23.b1 CHROMAT_FILE:
MSMg01no339_h23.b1 PHD_FILE: MSMg01no339_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:20 2005
(521 letters)
>mm_chr2_43453046_43453971
Length = 926
Score = 940 bits (486), Expect = 0.0
Identities = 512/524 (97%), Gaps = 9/524 (1%)
Strand = Plus / Minus
Query: 5 gaattcatatactattac--agccattcaaggagaagcctgtattttcctttggtcaaag 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaattcatatacta--acatagccattcaaggagaagcctgtattttcctttggtcaaag 669
Query: 63 gtaccttgtttagctaaatggatttctttatttgttgtagaattcatgaagaagtggtgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gtaccttgtttagctaaatggatttctttatttgttgtagaattcatgaagaagtggtgg 609
Query: 123 gtgttaaaagacatcccaggtcattttaaaggggagcaggcctgaaatcaagggggtcag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gtgttaaaagacatcccaggtcattttaaaggggagcaggcctgaaatcaagggggtcag 549
Query: 183 aataaaatctctttctacatctctagacatagtaaatgcatgtaataagcttacatcaca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aataaaatctctttctacatctctagacatagtaaatgcatgtaataagcttacatcaca 489
Query: 243 tggaatgaatgacatataccttct---atacaaaaaataccttgaaaatatggcattaaa 299
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 488 tggaatgaatgacacataccttctcctatacaaaaaataccttgaaaatatggcattaaa 429
Query: 300 atgaatgttatcaatattattctagttgtttctctggactgaagcataatttttttt--a 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 428 atgaatgttatcaatattattctagttgtttctctggactgaagcataatttttttttta 369
Query: 358 ctgatccttctgaaataaaactctgtcctatggtaccttgattatatgattgattcattg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctgatccttctgaaataaaactctgtcctatggtaccttgattatatgattgattcattg 309
Query: 418 ttattttcctatatttatggtgaaaaccactcattaagaagtttcaatgcagaaaataaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttattttcctatatttatggtgaaaaccactcattaagaagtttcaatgcagaaaataaa 249
Query: 478 agaacagaaagaacgaagagtatggtaagaaagtagaattaatg 521
|||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 248 agaacagaaagaactaagagtatgttaagaaagtagaattaatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 926
Length adjustment: 10
Effective length of query: 511
Effective length of database: 916
Effective search space: 468076
Effective search space used: 468076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_h23.g1 MSMg01no339_h23.g1 CHROMAT_FILE:
MSMg01no339_h23.g1 PHD_FILE: MSMg01no339_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:20 2005
(142 letters)
>mm_chr2_43306119_43306660
Length = 542
Score = 267 bits (138), Expect = 2e-76
Identities = 141/142 (99%)
Strand = Plus / Plus
Query: 1 acagcagttgtagcagcatgcacaaaacttgggacagcttaaaccagaccaaactgcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagcagttgtagcagcatgcacaaaacttgggacagcttaaaccagaccaaactgcaca 260
Query: 61 taggaagtggagtcccatcattagctaaagcactatgggttaaggtgaggaggggagaga 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggaagtggagttccatcattagctaaagcactatgggttaaggtgaggaggggagaga 320
Query: 121 tatgggggagagatatgggaga 142
||||||||||||||||||||||
Sbjct: 321 tatgggggagagatatgggaga 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space: 71556
Effective search space used: 71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
