BAC Information

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BAC

Clone NameMSMg01-339L06
Chromosome2 (Build37)
Map Location 161,912,756 - 162,043,658
singlet/doubletdoublet
Overlap genePtprt
Upstream geneChd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339L06.T7 (MSMg01no339_l06.b1)MSMg01-339L06.TJ (MSMg01no339_l06.g1)
ACCAG453922AG453923
length739722
length of high quality
(start - end)		500 (51 - 550)528 (58 - 585)
definitionCHROMAT_FILE: MSMg01no339_l06.b1 PHD_FILE: MSMg01no339_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:36 2005CHROMAT_FILE: MSMg01no339_l06.g1 PHD_FILE: MSMg01no339_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,912,756 - 161,913,251)(162,043,131 - 162,043,658)
sequence
NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTTATCGCGAACATAAGGTTAAAACCACATTGGTTATTA
ATATTGCAAGTAGCCTATTGCATTTACTGTGTTGCCCAGACAGCTGAAAA
TGCTGGGTTTTTTTGGCTTTGTTTTATTTTTTTAAATACATATCAGGTAA
AAGACAGATGCAAGCAGCATGTTGGGAGAATTGAGCCAACACTCACAAGG
TTGCAGGATGCCCTAAGTTGACATGAGACTGGTGTTCGGAGTATTCATTT
CCTTGGTCCAACTTAGCTCTGAGTGTTATGAAAAACAGCAGGCAAGGGAG
AAATGCAGAGCATGTTAACAAACTGAGATTTGAGGGCTGGGATGCTATGA
AATACGACAGCTTCAAGTCAGACTTGATTAACAATCATTAGGGAGAGAAC
ATCACCCATTTGGTATTCAGTGACCCGCCTCATTCTGCCAAGTGGTGGAG
GCAGTCTACAGAGAGAACACGAGAGAAACAAGACAAATGTAATGAAGAGT
GAAGAATCAAGACTAGCCTAGAATGGCTTATAGAGATCCATACCTGCTGG
CCACGGGCTCCCTAGGGGAGCCACAGTAAAGGCTCTGATTCAACTGGGAC
CTTCCTGCTGGCTTATGGATACATTTTCCCAATGGCAGTCCTTCCTCTCA
GATGATGCGCCTTGTGTCAAGTTGATATAGAACTTGGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAACATCTCTTCTTGCGGGGGCACAATTCAACTCCTGGCACAT
ATATGTTTTATTGATTTAAAACCCCTCTCCCAGATGCTTGTGAATTATTC
TTGTGTGCCTTAGCATCTATAGAATACAGACACCTTTTCATAATATGAAA
TGCCAGTGTATGCCTTCCCAGGTGTGTGCAGAGGCCACAGAGCATCTTGG
AGGTGTGAACAGTCAGAAGTGTAATTGCCTGTGCCTGGAGACTAGTTCTT
TACTTCTTTCTCCTCTCACTCTTAGGTCTTGTCTTCCTTCAGCTCTATTG
GATTCTGTCTGTGCCTTGCTGTCAGGCAGAGCTGAACCCTTCTTAATAGT
GACCCTCAGGGCAGGGAGACCATCCATAGATTGGGCCTTGTGTCTCTCCA
GCTATAGTTCTCAGGAACCTTTCCCAAAGGCTCCCTTTCACAGCCAGGCT
GACTTTAGTCCTCCTCCTTGCCACTGCTAGATAGTGACATTGCTTCTCAC
AGGGCCTAGCTTTGGGCGACTTCTTGACTTTTTGAGGATGCCTGGTCCAT
CCCTGTCATCCAAGATGATCTCTGTCATCTGCACATTGTGTTGTTATGCA
TTCAGTTCCTTAAACTATGGGGTCAACAAAGGAGAGGNGGTTCGGTTGGT
TCCGAGTTCCCCCATAATCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_l06.b1 MSMg01no339_l06.b1 CHROMAT_FILE:
MSMg01no339_l06.b1 PHD_FILE: MSMg01no339_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:36 2005
         (500 letters)



>mm_chr2_161912552_161913451
          Length = 900

 Score =  944 bits (488), Expect = 0.0
 Identities = 494/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttatcgcgaacataaggttaaaaccacattggttattaatattgcaagtagc 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttatcgggagcataaggttaaaaccacattggttattaatattgcaagtagc 264

                                                                       
Query: 65  ctattgcatttactgtgttgcccagacagctgaaaatgctgggtttttttggctttgttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctattgcatttactgtgttgcccagacagctgaaaatgctgggtttttttggctttgttt 324

                                                                       
Query: 125 tatttttttaaatacatatcaggtaaaagacagatgcaagcagcatgttgggagaattga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatttttttaaatacatatcaggtaaaagacagatgcaagcagcatgttgggagaattga 384

                                                                       
Query: 185 gccaacactcacaaggttgcaggatgccctaagttgacatgagactggtgttcggagtat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccaacactcacaaggttgcaggatgccctaagttgacatgagactggtgttcggagtat 444

                                                                       
Query: 245 tcatttccttggtccaacttagctctgagtgttatgaaaaacagcaggcaagggagaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatttccttggtccaacttagctctgagtgttatgaaaaacagcaggcaagggagaaat 504

                                                                       
Query: 305 gcagagcatgttaacaaactgagatttgagggctgggatgctatgaaatacgacagcttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagagcatgttaacaaactgagatttgagggctgggatgctatgaaatacgacagcttc 564

                                                                       
Query: 365 aagtcagacttgattaacaatcattagggagagaacatcacccatttggtattcagtgac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagtcagacttgattaacaatcattagggagagaacatcacccatttggtattcagtgac 624

                                                                       
Query: 425 ccgcctcattctgccaagtggtggaggcagtctacagagagaacacgagagaaacaagac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccgcctcattctgccaagtggtggaggcagtctacagagagaacacgagagaaacaagac 684

                           
Query: 485 aaatgtaatgaagagt 500
           ||||||||||||||||
Sbjct: 685 aaatgtaatgaagagt 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_l06.g1 MSMg01no339_l06.g1 CHROMAT_FILE:
MSMg01no339_l06.g1 PHD_FILE: MSMg01no339_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:36 2005
         (528 letters)



>mm_chr2_162042931_162043858
          Length = 928

 Score = 1021 bits (528), Expect = 0.0
 Identities = 528/528 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacatctcttcttgcgggggcacaattcaactcctggcacatatatgttttattgattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aaacatctcttcttgcgggggcacaattcaactcctggcacatatatgttttattgattt 669

                                                                       
Query: 61  aaaacccctctcccagatgcttgtgaattattcttgtgtgccttagcatctatagaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaaacccctctcccagatgcttgtgaattattcttgtgtgccttagcatctatagaatac 609

                                                                       
Query: 121 agacaccttttcataatatgaaatgccagtgtatgccttcccaggtgtgtgcagaggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agacaccttttcataatatgaaatgccagtgtatgccttcccaggtgtgtgcagaggcca 549

                                                                       
Query: 181 cagagcatcttggaggtgtgaacagtcagaagtgtaattgcctgtgcctggagactagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cagagcatcttggaggtgtgaacagtcagaagtgtaattgcctgtgcctggagactagtt 489

                                                                       
Query: 241 ctttacttctttctcctctcactcttaggtcttgtcttccttcagctctattggattctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctttacttctttctcctctcactcttaggtcttgtcttccttcagctctattggattctg 429

                                                                       
Query: 301 tctgtgccttgctgtcaggcagagctgaacccttcttaatagtgaccctcagggcaggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tctgtgccttgctgtcaggcagagctgaacccttcttaatagtgaccctcagggcaggga 369

                                                                       
Query: 361 gaccatccatagattgggccttgtgtctctccagctatagttctcaggaacctttcccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaccatccatagattgggccttgtgtctctccagctatagttctcaggaacctttcccaa 309

                                                                       
Query: 421 aggctccctttcacagccaggctgactttagtcctcctccttgccactgctagatagtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aggctccctttcacagccaggctgactttagtcctcctccttgccactgctagatagtga 249

                                                           
Query: 481 cattgcttctcacagggcctagctttgggcgacttcttgactttttga 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cattgcttctcacagggcctagctttgggcgacttcttgactttttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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