BAC Information

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BAC

Clone NameMSMg01-339M03
Chromosome2 (Build37)
Map Location 103,658,717 - 103,659,332
singlet/doubletsinglet
Overlap geneLOC433458
Upstream geneCd44, Pdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10, Caprin1
Downstream geneLOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339M03.T7 (MSMg01no339_m03.b1)MSMg01-339M03.TJ (MSMg01no339_m03.g1)
ACCAG453964AG453965
length729736
length of high quality
(start - end)
620 (50 - 669)553 (83 - 635)
definitionCHROMAT_FILE: MSMg01no339_m03.b1 PHD_FILE: MSMg01no339_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:40 2005CHROMAT_FILE: MSMg01no339_m03.g1 PHD_FILE: MSMg01no339_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:40 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTCGACTGACATAAATTATAAGCAATACAATAAAAATTAA
GCTTAATTTAACATAGTGGTTTGCTTTTTTAAATAACTAAAACAGATTTA
TAGTTCAACAAATTTTGGTCATTTGAACACAAACTATTCTGATTGGTGCA
TTTTTTTAATACAGCAATTCAACACACCCTGAGTTTCACTTCCTAGTTGA
TGGTTAAATGCTAATCACCTATGGAAATAAAGATGTTTAAAATGAAGAGC
CTTGCATCTTGGTGTCTAGTTCTCTGAAATCACTGAATAGGTCAGTCAGT
TTCTGTCACGGTCAAAGGACCTGTGTCTACTTTGATTTGGTCTATGTGAC
TCTGGTGAGATAACAATTTGCTCCAACGCAGATAACCAACGATGAGGTGA
AATCAGGATGTGCAATGCTCTGCCCAGGAGTCGACAGCTCGCTCTATAGC
TTCTGTATCATCACCTGAAATTTGCAGGCAGGCATTGAAGAGACTTCAGC
TGTTACAATACTTTTTATTCCCAAGTTTGACAAGCGCCCTCTGATTAAGC
CACATGTAAGTGCTAGATACTTGGACGCATGTTCTAAATACTGTTTTCCT
GCAGACAGCTGAATGAGTAGTCGAAATTTGTTGTCCTGAAATACATATAT
GCCCTGATGATTTGTCCTTAGATTGTCGA
GGATCGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAGTTAATTGTTAGG
AAGACCTGGGTGAGCATCTGGCCCAGGAAGCGCCAGGAGGGATACTAAGG
AGGGATACTAAGGAGGGATACTAAGGAGGGATACTAAGGAGGGATACTAA
GGAGGAATACTAAGGAGGAATACTAAGGAGGGATACTAAGGAGGGATACT
AAGGAGGGATACTAAGGAGGAATACTAAGGAGGGATACTAAGGAGGGATA
CTAAGGAGGGATACTAAGGAGGAATACTAAGGAGGAATACTAAGGAGGGA
TACTAAGGAGGGATACTAAGGAGGGATACTAAGGAGGGATACTAAGGAGG
AATACTAAGGAGGGATACTAAGGAGGGATACTAAGGAGGGATACTAAGGA
GGGATACTAAGGAGGAATACTAAGGAGGGATACTAAGGAGGAATACTAAG
GAGGGATACTAAGGAGGAATACTAAGGAGGGATACTAAGGAGGGATACTA
AGGAGGAATACTAAGGAGGGATACTAAGGAGGAATACTAAGGAGGGATAC
TAAGGAGGAATACTAAGGAGGGATACTAAGGAGGGATACTAAGGAGGGAT
ACTAAGGAGGAATACTAACGAGGGATACTAAGGAGGAATACTATCGAGGG
ATTCTAATGAGGAATACTAAGGAGGAATACTAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_m03.b1 MSMg01no339_m03.b1 CHROMAT_FILE:
MSMg01no339_m03.b1 PHD_FILE: MSMg01no339_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:40 2005
         (620 letters)



>mm_chr2_103658513_103659532
          Length = 1020

 Score = 1176 bits (608), Expect = 0.0
 Identities = 614/616 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcgactgacataaattataagcaatacaataaaaattaagcttaatttaaca 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcgacagaaataaattataagcaatacaataaaaattaagcttaatttaaca 264

                                                                       
Query: 65  tagtggtttgcttttttaaataactaaaacagatttatagttcaacaaattttggtcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtggtttgcttttttaaataactaaaacagatttatagttcaacaaattttggtcatt 324

                                                                       
Query: 125 tgaacacaaactattctgattggtgcatttttttaatacagcaattcaacacaccctgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaacacaaactattctgattggtgcatttttttaatacagcaattcaacacaccctgag 384

                                                                       
Query: 185 tttcacttcctagttgatggttaaatgctaatcacctatggaaataaagatgtttaaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcacttcctagttgatggttaaatgctaatcacctatggaaataaagatgtttaaaat 444

                                                                       
Query: 245 gaagagccttgcatcttggtgtctagttctctgaaatcactgaataggtcagtcagtttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaagagccttgcatcttggtgtctagttctctgaaatcactgaataggtcagtcagtttc 504

                                                                       
Query: 305 tgtcacggtcaaaggacctgtgtctactttgatttggtctatgtgactctggtgagataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtcacggtcaaaggacctgtgtctactttgatttggtctatgtgactctggtgagataa 564

                                                                       
Query: 365 caatttgctccaacgcagataaccaacgatgaggtgaaatcaggatgtgcaatgctctgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caatttgctccaacgcagataaccaacgatgaggtgaaatcaggatgtgcaatgctctgc 624

                                                                       
Query: 425 ccaggagtcgacagctcgctctatagcttctgtatcatcacctgaaatttgcaggcaggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaggagtcgacagctcgctctatagcttctgtatcatcacctgaaatttgcaggcaggc 684

                                                                       
Query: 485 attgaagagacttcagctgttacaatactttttattcccaagtttgacaagcgccctctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attgaagagacttcagctgttacaatactttttattcccaagtttgacaagcgccctctg 744

                                                                       
Query: 545 attaagccacatgtaagtgctagatacttggacgcatgttctaaatactgttttcctgca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attaagccacatgtaagtgctagatacttggacgcatgttctaaatactgttttcctgca 804

                           
Query: 605 gacagctgaatgagta 620
           ||||||||||||||||
Sbjct: 805 gacagctgaatgagta 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)