BAC Information

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BAC

Clone NameMSMg01-340D20
Chromosome2 (Build37)
Map Location 125,507,314 - 125,679,889
singlet/doubletdoublet
Overlap geneShc4, 3110001I20Rik, Cops2
Upstream geneLOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Eid1
Downstream geneGalk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340D20.T7 (MSMg01no340_d20.b1)MSMg01-340D20.TJ (MSMg01no340_d20.g1)
ACCAG454327AG454328
length736713
length of high quality
(start - end)
646 (47 - 692)557 (78 - 634)
definitionCHROMAT_FILE: MSMg01no340_d20.b1 PHD_FILE: MSMg01no340_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:14 2005CHROMAT_FILE: MSMg01no340_d20.g1 PHD_FILE: MSMg01no340_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,507,314 - 125,507,956)(125,679,333 - 125,679,889)
sequence
NACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATAGAGTATTATAAGAAATGGAAGACCGCCTGCTTCCCGGGAG
CCAATGAGAGTGCTGGGTAAGTGGTTCGAAATAACAATAGAAACAGTGAT
GGATGTTGATGCTGCTACATACAGTAATTGCTTATTAATGTTAGAAGTCA
CTGCCTTTATATATTACTTTGTAGTTTCACAAAGTGCTTTCCCAAACACT
CTGATTCTCATGCATATTCTAGTATATTCTAGGGAGATTAGCATTGTGAA
TCTGACTTGAAGGGAATGGTCCCTCTCACAAGGTGAACCATGCTGGCAGA
GTGGGCACCGCAATGACAGACATAGAAGCCGGAGCAGAGACAAGAAGTAC
TGGATGCAGAGAGCTCACATGTGCGACAGCCCGCTGTGGGAAAAAGCAGT
GAACAGCTGAGACAGATTAGCAGTTCAAAACGCTTTGCAAAAGGCCAGAT
AGCAAATGTGTTACTGTTTAGTTCCAATGAAAAGCAGCCTGAGACAATAT
ATAAACAAGTGAACTCGTCTGCGTGCCAATAACATTTTATTTTTAGGAAT
ATGAGCTGGACAGAGCTGGCTGATGGGCCGTAATAGCCATCCCCTGAATT
AACCACTTATACAACATCAGAAAAGTTTAGTCTTTAAAAACAAAGCAGGG
TGTGGTAGCTTCATAGCCTAAGCATTCAAGAGACTA
NGGCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGACAGCTAGGACTTTGTAGA
GAGACCCTGTCTCAAAAAAAGTTGTTCATGGTGGAGGCAAAAGGAGTGAG
GGGACAGTATAGACACTAAGCCCTACATTTGATGCATGTCATGTAGAGAG
AAGCATGACTGTAGATTTGGTTCTGCTAAAAAGAGCTGGGGGATCAAGAA
GGAAAAGCCTTGGTAAATACATTTACCAAAGTGTGACACTGGGGAGCTGC
AAAGGAGAAAAGGAAGGAGAAGGGATTGTGTAGAATTCCTAACCAGGGTA
TTATTCGCTGCTGCTAGTGTAGTTAGAGGCATAGGCAGGCCTCTAACTAC
AGGCTAAGACGGAGGCAGGATTGCATGCTCACACCCAACTTAGGCAACTT
AATAAGACCCTTTCTCAAAAAATAAATAGCTGGATGAAATTACTGGTAGT
GGAACATTTGTCTAAAATGCATAAGGCCTGAGTTCATTCTCCTCCAGCAT
GGCCAAGATAAAATTATGATTTGTATTANAGCAGCAACTTANAATTATAT
GGCATATTTGGGGGGAAAGAGAATAGATTTAGATATAGGTCATCACAGAC
TGCTTTCGAGACATTTGAGTTATTTCATCAGGAAGTTGGAGCCATGACTT
GACCTTAAGATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_d20.b1 MSMg01no340_d20.b1 CHROMAT_FILE:
MSMg01no340_d20.b1 PHD_FILE: MSMg01no340_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:14 2005
         (646 letters)



>mm_chr2_125507110_125508156
          Length = 1047

 Score = 1220 bits (631), Expect = 0.0
 Identities = 640/643 (99%), Gaps = 1/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatagagtattataagaaatggaagaccgcctgcttcccgggagccaatgagag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatagagtattataagaaatggaagaccgcctgcttcccgggagccaatgagag 264

                                                                       
Query: 65  tgctgggtaagtggttcgaaataacaatagaaacagtgatggatgttgatgctgctacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctgggtaagtggttcgaaataacaatagaaacagtgatggatgttgatgctgctacat 324

                                                                       
Query: 125 acagtaattgcttattaatgttagaagtcactgcctttatatattactttgtagtttcac 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 acagtaattgcttattaatgttagaagtcactgcctttatatattattttgtagtttcac 384

                                                                       
Query: 185 aaagtgctttcccaaacactctgattctcatgcatattctagtatattctagggagatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagtgctttcccaaacactctgattctcatgcatattctagtatattctagggagatta 444

                                                                       
Query: 245 gcattgtgaatctgacttgaagggaatggtccctctcacaaggtgaaccatgctggcaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcattgtgaatctgacttgaagggaatggtccctctcacaaggtgaaccatgctggcaga 504

                                                                       
Query: 305 gtgggcaccgcaatgacagacatagaagccggagcagagacaagaagtactggatgcaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgggcaccgcaatgacagacatagaagccggagcagagacaagaagtactggatgcaga 564

                                                                       
Query: 365 gagctcacatgtgcgacagcccgctgtgggaaaaagcagtgaacagctgagacagattag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagctcacatgtgcgacagcccgctgtgggaaaaagcagtgaacagctgagacagattag 624

                                                                       
Query: 425 cagttcaaaacgctttgcaaaaggccagatagcaaatgtgttactgtttagttccaatga 484
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagttcaaaacgctttgcgaaaggccagatagcaaatgtgttactgtttagttccaatga 684

                                                                       
Query: 485 aaagcagcctgagacaatatataaacaagtgaactcgtctgcgtgccaataacattttat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaagcagcctgagacaatatataaacaagtgaactcgtctgcgtgccaataacattttat 744

                                                                       
Query: 545 ttttaggaatatgagctggacagagctggctgatgggccgtaatagccatcccctgaatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttttaggaatatgagctggacagagctggctgatgggccgtaatagccatcccctgaatt 804

                                                      
Query: 605 aa-ccacttatacaacatcagaaaagtttagtctttaaaaaca 646
           || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaaccacttatacaacatcagaaaagtttagtctttaaaaaca 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1047
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1037
Effective search space:   659532
Effective search space used:   659532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no340_d20.g1 MSMg01no340_d20.g1 CHROMAT_FILE:
MSMg01no340_d20.g1 PHD_FILE: MSMg01no340_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:14 2005
         (557 letters)



>mm_chr2_125679324_125680280
          Length = 957

 Score = 1058 bits (547), Expect = 0.0
 Identities = 554/557 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggacagctaggactttgtagagagaccctgtctcaaaaaaagttgttcatggtggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 566 aaggacagctaggactttgtagagagaccctgtctcaaaaaaagttgttcatggtggaga 507

                                                                       
Query: 61  caaaaggagtgaggggacagtatagacactaagccctacatttgatgcatgtcatgtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caaaaggagtgaggggacagtatagacactaagccctacatttgatgcatgtcatgtaga 447

                                                                       
Query: 121 gagaagcatgactgtagatttggttctgctaaaaagagctgggggatcaagaaggaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gagaagcatgactgtagatttggttctgctaaaaagagctgggggatcaagaaggaaaag 387

                                                                       
Query: 181 ccttggtaaatacatttaccaaagtgtgacactggggagctgcaaaggagaaaaggaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccttggtaaatacatttaccaaagtgtgacactggggagctgcaaaggagaaaaggaagg 327

                                                                       
Query: 241 agaagggattgtgtagaattcctaaccagggtattattcgctgctgctagtgtagttaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaagggattgtgtagaattcctaaccagggtattattcgctgctgctagtgtagttaga 267

                                                                       
Query: 301 ggcataggcaggcctctaactacaggctaagacggaggcaggattgcatgctcacaccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggcataggcaggcctctaactacaggctaagacggaggcaggattgcatgctcacaccca 207

                                                                       
Query: 361 acttaggcaacttaataagaccctttctcaaaaaataaatagctggatgaaattactggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 acttaggcaacttaataagaccctttctcaaaaaataaatagctggatgaaattactggt 147

                                                                       
Query: 421 agtggaacatttgtctaaaatgcataaggcctgagttcattctcctccagcatggccaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 agtggaacatttgtctaaaatgcataaggcctgagttcattctcctccagcatggccaag 87

                                                                       
Query: 481 ataaaattatgatttgtattanagcagcaacttanaattatatggcatatttggggggaa 540
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 86  ataaaattatgatttgtattaaagcagcaacttaaaattatatggcatatttggggggaa 27

                            
Query: 541 agagaatagatttagat 557
           |||||||||||||||||
Sbjct: 26  agagaatagatttagat 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)