Query= MSMg01no340_h17.b1 MSMg01no340_h17.b1 CHROMAT_FILE:
MSMg01no340_h17.b1 PHD_FILE: MSMg01no340_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:30 2005
(674 letters)
>mm_chr2_115498234_115499307
Length = 1074
Score = 961 bits (497), Expect = 0.0
Identities = 571/614 (92%), Gaps = 33/614 (5%)
Strand = Plus / Minus
Query: 61 agtccacagaagacacttgatgcataactctcaatggtatctcactaccagggtatccca 120
||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 621 agtccactgaagacacttgatgcataactctcaatggtgtctcactacccgggtatccca 562
Query: 121 cattttctaactaaattatttacttctttccacataaatgtgctttcacttttattgttg 180
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 cattttctacctaaattatttacttctttccacataaatgtgctctcacttttattgttg 502
Query: 181 taaattatttacatctaaaatgttgaatcatgaaacggtggttactgatggtggagaaat 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 taaattatttacatctaaaatgttgaatcatgaaatggtggttactgatggtggagaaat 442
Query: 241 gaaacccacagcccggggcttcctgcaccatatttcccccttcagacctttgtctaacag 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 gaaacccacagcccggggcttcctgcaccatctttcccccttcagacctttgtctaacag 382
Query: 301 ctctggccttgagtcccacttaggaaagttgaagtgactgctttttcactgagtatgttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctggccttgagtcccacttaggaaagttgaagtgactgctttttcactgagtatgttt 322
Query: 361 ggtggatatgagatacagagggaaatgtatgggtgtgtagataccatatacacagttaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtggatatgagatacagagggaaatgtatgggtgtgtagataccatatacacagttaat 262
Query: 421 taatcaaacaaacaaaaaaataaataaacacacacacacacagtagtcatcaaaaggaaa 480
||||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct: 261 taatcaaacaaac-aaaaaataaataa--atacacacacacagtagtcat---------- 215
Query: 481 gagaagaaaagaaaagaaaagaaaagaanagaaaagaaaagaaaagaaaagaaaagaaaa 540
|||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 214 ----------gaaaagaaaagaaa-----agaaaagaaaagaaaagaaaagaaaagaaaa 170
Query: 541 gaaaagaaaagcaaagcaaagcacccagacaacccatcctccttaccaatgattggcgct 600
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gaaaagaaaag---ag--aagcacccagacaacccatcctccttaccaatgattggcgct 115
Query: 601 gtgtcactttagtacatgaccggnttactttattctctgtacacacatacctccttgtaa 660
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 114 gtgtcactttagtacatgaccagcttactttattctctgtacacacatacctccttgtaa 55
Query: 661 cattttcataatgg 674
||||||||||||||
Sbjct: 54 cattttcataatgg 41
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_h17.g1 MSMg01no340_h17.g1 CHROMAT_FILE:
MSMg01no340_h17.g1 PHD_FILE: MSMg01no340_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:30 2005
(626 letters)
>mm_chr2_115327317_115328342
Length = 1026
Score = 1172 bits (606), Expect = 0.0
Identities = 621/626 (99%)
Strand = Plus / Plus
Query: 1 ctaagccagtggaaccaaagtttgaagtaggggatgtcatgctttgcttctattaaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagccagtggaaccaaagtttgaagtaggggatgtcatgctttgcttctattaaagag 260
Query: 61 aaaggggaagtatgatcatatagtcatgggcacagagtgtagtaagacacctataaaaag 120
|| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 261 aagggggaagtatgatcatatagtcatgggcacagagtgcagtacgacacctataaaaag 320
Query: 121 ttcctggggagcttcagaacttcatttaaagcagtggaagggcatcctgtctcatatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctggggagcttcagaacttcatttaaagcagtggaagggcatcctgtctcatatcaa 380
Query: 181 attgtcgtatacatctgctatatgtggttcacattataagtccaaggagacagaaactat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtcgtatacatctgctatatgtggttcacattataagtccaaggagacagaaactat 440
Query: 241 gcacataaaaggatgccaccatgggaaatcacaatgctccagccttagcgtgtgcgacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacataaaaggatgccaccatgggaaatcacaatgctccagccttagcgtgtgcgacat 500
Query: 301 tgaaggcatcttaatcttgacatttttgctgagactactatcaaagctaactgaacattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaggcatcttaatcttgacatttttgctgagactactatcaaagctaactgaacattt 560
Query: 361 tgttgttgaaatgctctcgttagatatgatttataaggcccagatgaaattttgtcagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttgttgaaatgctctcgttagatatgatttataaggcccagatgaaattttgtcagat 620
Query: 421 gttcaagattgaggctttttctcacacactcttcaagatctatctggccctggcccacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcaagattgaggctttttctcacacactcttcaagatctatctggccctggcccacat 680
Query: 481 tttcatcgcagcaacaaactatgtctaggtgacaagagctgtatcagctatgtgtagctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttcatcgcagcaacaaactatgtctaggtgacaagagctgtatcagctatgtgtagctg 740
Query: 541 cataacaaaacaggtcagagtaaagatggctttcgacatcatgtctctgcaccaggcatg 600
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 cataacaaaataggtcagagtaaagatggctttcaacatcatgtctctgcaccaggcatg 800
Query: 601 ctttatttgtgtgtgtctctctctca 626
||||||||||||||||||||||||||
Sbjct: 801 ctttatttgtgtgtgtctctctctca 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
