Query= MSMg01no340_m05.b1 MSMg01no340_m05.b1 CHROMAT_FILE:
MSMg01no340_m05.b1 PHD_FILE: MSMg01no340_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:50 2005
(630 letters)
>mm_chr2_79807318_79808347
Length = 1030
Score = 1133 bits (586), Expect = 0.0
Identities = 612/626 (97%), Gaps = 11/626 (1%)
Strand = Plus / Plus
Query: 16 gaattcactaaaccacaacaggatctaaggatatatacactaagtaacaggttggcaatt 75
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactaaaccacaaaaggatctaaggatatatacactaagtaacaggttggcaatt 264
Query: 76 acaatgaagtattcacaaaaagaattagatgagcatgtgtaaatgactaattcttgatac 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaatgaagtattcacaaaaagaattagatgagcatgtgtaaatgactaattcttgatac 324
Query: 136 attataaatgcccaaaacatgttagcttccattttccttatctagaccttaaactcatag 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attataaatgcccaaaacatgttagcttccattttccttatctagaccttaaactcatag 384
Query: 196 tcacagttttgta--tat-----ta----tgtcctgggcaggaccataaatacaagaaga 244
||||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct: 385 tcacagttttgtaaatatacaaataataatgtcctgggcaggaccataaatacaagaaga 444
Query: 245 aatttaagaagtgaaagaaaggaaatttggaaattttcacatgtaataaatgcatgagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatttaagaagtgaaagaaaggaaatttggaaattttcacatgtaataaatgcatgagaa 504
Query: 305 aaagagcagtagaaaacactgtaaatataaaggaacaatgtatgttaggagttgttctac 364
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagagcagtaaaaaacactgtaaatataaaggaacaatgtatgttaggagttgttctac 564
Query: 365 agttaatctcctgttaccaaagctcacttcataatgcacagttacatttgatttaccatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agttaatctcctgttaccaaagctcacttcataatgcacagttacatttgatttaccatc 624
Query: 425 taaatgagaaggattcatagaatcttttgacacaataatgaaggattccatcacattcga 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaataagaaggattcatagaatcttttgacacaataatgaaggattccatcacattcga 684
Query: 485 agttataaagttaccaattacctaaaatgcttggtaaataacatgacattttatcttcga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agttataaagttaccaattacctaaaatgcttggtaaataacatgacattttatcttcga 744
Query: 545 taaaaattagtgtctggagcctggaagtgagattttccccagtattattacaaactctca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taaaaattagtgtctggagcctggaagtgagattttccccagtattattacaaactctca 804
Query: 605 acaaaggctttgtcttgtattctcag 630
||||||||||||||||||||||||||
Sbjct: 805 acaaaggctttgtcttgtattctcag 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_m05.g1 MSMg01no340_m05.g1 CHROMAT_FILE:
MSMg01no340_m05.g1 PHD_FILE: MSMg01no340_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:50 2005
(563 letters)
>mm_chr2_79966096_79967058
Length = 963
Score = 1065 bits (551), Expect = 0.0
Identities = 560/563 (99%)
Strand = Plus / Minus
Query: 1 tctcatcagtgttgctcctggcttctacttttaagtgtctgcagtgaaaatcctggcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tctcatcagtgttgctcctggcttctacttttaagtgtctgcagtgaaaatcctggcact 637
Query: 61 catgaatgctattaaacagttctgtaatgatttcttattttgataaaatagactcagtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 catgaatgctattaaacagttctgtaatgatttcttattttgataaaatagactcagtgc 577
Query: 121 tcactattggatatttatttggaaaggattttacttgattttcttttatgatatccaact 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 576 tcactattggatatttatttggaaaggattttatttgattttcttttatgatatccaact 517
Query: 181 ttataaacttattgctgtttttcagcaggctatacatttttaatttggcatacaatatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttataaacttattgctgtttttcagcaggctatacatttttaatttggcatacaatatgt 457
Query: 241 acattttaaggttaaattcaagtggagatgaaaataaatgaaatatttattcatgaaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acattttaaggttaaattcaagtggagatgaaaataaatgaaatatttattcatgaaaca 397
Query: 301 tggaaacacaagccactacagaagatacttggatagtctttcataggtatttttatatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tggaaacacaagccactacagaagatacttggatagtctttcataggtatttttatatag 337
Query: 361 tatattttagaccatttttaaaaagtattgttttgccttttaccccagcttactttaaaa 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tatattttagacaatttttaaaaagtattgttttgccttttaccccagcttactttaaaa 277
Query: 421 cttataattttcctgctccattctctccaatgtttggattgcaagcatgcactaccacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cttataattttcctgctccattctctccaatgtttggattgcaagcatgcactaccacaa 217
Query: 481 ctggtttgtatactcaaagagcttgctgacaggagcctgatacagctgtctcctgagagg 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 216 ctggtttgtatactcaaagagcttgctgacaggagcctgatacagctatctcctgagagg 157
Query: 541 ctctgccagtgcctgaaaaatac 563
|||||||||||||||||||||||
Sbjct: 156 ctctgccagtgcctgaaaaatac 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
