BAC Information

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BAC

Clone NameMSMg01-341B23
Chromosome2 (Build37)
Map Location 106,667,005 - 106,824,982
singlet/doubletdoublet
Overlap geneLOC677260, 2700007P21Rik
Upstream geneElp4, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15, C130023O10Rik
Downstream geneLOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341B23.T7 (MSMg01no341_b23.b1)MSMg01-341B23.TJ (MSMg01no341_b23.g1)
ACCAG454997AG454998
length783777
length of high quality
(start - end)		508 (39 - 546)394 (70 - 463)
definitionCHROMAT_FILE: MSMg01no341_b23.b1 PHD_FILE: MSMg01no341_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:17 2005CHROMAT_FILE: MSMg01no341_b23.g1 PHD_FILE: MSMg01no341_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,667,005 - 106,667,508)(106,824,590 - 106,824,982)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCC
TGTTTTATCTGACCAATAAGTCATCCAGTGTATAGAGAGTATGTGTGACT
TATTTCACGCCCTCCTGAACCATAACAATGACTTGCCCTGATAGCTCTTG
TAACACTGCTTCTCTCCTCACAGCCAGTATTGATCTGGTTAGCAGCGTCG
CCTGAGGGCAGGGCTGCGCTGTTACCTTCTGCAACAGCTTCAGATCTGGT
GTGCCCGAACAGAAAGAGGTGTTCACTTTGTGCTTTAGAATCAGGTAACT
ACTATATCATAAGTGAAGGAAAAAATGTTCCTTCTGCTTCTAAAGCTTTG
AGATTGGAAGTCATGAATAAAACTGGCAATAGACAGCAAGGGGGAAAGCA
CACAAATGTATTTTTTAGTATGTTTGACTCAGTATACACAAGGATTCCAT
AGGAAGACGGGAGAACCCTAAGAAGTAGTTGGGTTCTGTGACGTTATATA
CCATCTTTTTTAAAAAATATATGTTTTCTTAAGATTTTACTTTTATAGGC
TAGGCTTACAACCAAAAATACAATATTTTTGCTTTTTTAACGCTTATTTA
GATATTTACCGACTATATTTCCCTTTTCTTCCCCTTTATTTTTTTTTTCC
CCACCCCTCTTTATCCTCTATATTTTTCACCTATCCCTACTCCCCCTTTC
TCTTTTTTCCACTTTTCACCCCCGTTTTATTCCTCCCTTTTTATTTTTCC
CTTCTTTCCCCTCCCGCGTGTTTTTTCCTTCTT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTACGCCTGTGAAGGAAAGAAAACCATCTCA
AGATAGCTTGAGAAAACAAAATAGAAAGCTTTATTATCAGAGTATCTGTG
TGCTTCTCAAAATAGACCAGGGAAATGGCTGTGCTTGTATCAGAGGTAAC
AATGGAACACATTCCCTGGGAAATGGCAGGGGATGTGTTCTCTTCACAGC
TCGCCTCCCCTCCTCCCGATGTGTGTGTATTAGTGCAACTCACATTGTTC
TGGTTTTCCTCTACCAAATGGCCAAAAACTAAAGCAGCCAGGCAGACCCA
CGTTGAAAACTTCCAGAGGGAGACAGATCAGCCCAGCACATTTCAGGCAC
CTAGGTATGGATCGAACAGTTGCAGCCCTGGAAGTGTGATGCATTAATGT
GCTGGAGGGCTGCACTCACCTCTTTAATTGGACCCAGGAAGTAAGCATCA
TTAAAAGCAGGAAGAGCTCAGAGCAGGGATCTCTCTCTCACCCCTTAGTC
AGCCTGGGCTTCTATCAGCCTTTTTTGGTGTCATGCCGGGGTGTATGGCA
CTTTTTTCCTCCGGGTTAAACCCTGAAAATCCCCTTCCCTGCCCGGCGTC
TTTTAAATCCCGTGCCCTTTTGCTTTTACCTCATGTTTCCCCCCCTCTTT
TGATGCCCCCCCCACAACCGATTTTATTCTCTCTTAAGCTTCCTACCTCC
CGCCATTCTTTTCGCTTTCCCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_b23.b1 MSMg01no341_b23.b1 CHROMAT_FILE:
MSMg01no341_b23.b1 PHD_FILE: MSMg01no341_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:17 2005
         (508 letters)



>mm_chr2_106666800_106667709
          Length = 910

 Score =  936 bits (484), Expect = 0.0
 Identities = 499/504 (99%), Gaps = 2/504 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcctgttttatctgaccaataagtcatccagtgtatagagagtatgtgtgacttat 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcctgttttacctgaccaataagtcatccagtgtatagagagtatgtgtgacttat 265

                                                                       
Query: 66  ttcacgccctcctgaaccataacaatgacttgccctgatagctcttgtaacactgcttct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttcacgccctcctgaaccataacaatgacttgccctgatagctcttgtaacactgcttct 325

                                                                       
Query: 126 ctcctcacagccagtattgatctggtt-agcagcgtcgcctgagggcagggctgcgctgt 184
           ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 326 ctcctcacagccagtattgatctggtttagcagcatcgcctgagggcagggctgcgctgt 385

                                                                       
Query: 185 taccttctgcaacagcttcagatctggtgtgcccgaacagaaagaggtgttcactttgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 taccttctgcaacagcttcagatctggtgtgcccgaacagaaagaggtgttcactttgtg 445

                                                                       
Query: 245 ctttagaatcaggtaactactatatcataagtgaaggaaaaaa-tgttccttctgcttct 303
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 446 ctttagaatcaggtaactactatatcataagtgaaggaaaaaaatgttccttctgcttct 505

                                                                       
Query: 304 aaagctttgagattggaagtcatgaataaaactggcaatagacagcaagggggaaagcac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaagctttgagattggaagtcatgaataaaactggcaatagacagcaagggggaaagcac 565

                                                                       
Query: 364 acaaatgtattttttagtatgtttgactcagtatacacaaggattccataggaagacggg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acaaatgtattttttagtatgtttgactcagtatacacaaggattccataggaagacggg 625

                                                                       
Query: 424 agaaccctaagaagtagttgggttctgtgacgttatataccatcttttttaaaaaatata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 626 agaaccctaagaagtagttgggttctgtgacgttatataccatctttttaaaaaaatata 685

                                   
Query: 484 tgttttcttaagattttactttta 507
           ||||||||||||||||||||||||
Sbjct: 686 tgttttcttaagattttactttta 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 910
Length adjustment: 10
Effective length of query: 498
Effective length of database: 900
Effective search space:   448200
Effective search space used:   448200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_b23.g1 MSMg01no341_b23.g1 CHROMAT_FILE:
MSMg01no341_b23.g1 PHD_FILE: MSMg01no341_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:17 2005
         (394 letters)



>mm_chr2_106824390_106825182
          Length = 793

 Score =  739 bits (382), Expect = 0.0
 Identities = 391/394 (99%), Gaps = 1/394 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacgcctgtgaaggaaagaaaaccatctcaagatagcttgagaaaacaaaatagaaagc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 593 ttacgcctgtgaaggaaagaaaaccatctcaagctagcttgagaaaacaaaatagaaagc 534

                                                                       
Query: 61  tttattatcagagtatctgtgtgcttctcaaaatagaccagggaaatggctgtgcttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 533 tttattatcagagtatctgtgtgcttctcaaaatagaccagggaaat-gctgtgcttgta 475

                                                                       
Query: 121 tcagaggtaacaatggaacacattccctgggaaatggcaggggatgtgttctcttcacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tcagaggtaacaatggaacacattccctgggaaatggcaggggatgtgttctcttcacag 415

                                                                       
Query: 181 ctcgcctcccctcctcccgatgtgtgtgtattagtgcaactcacattgttctggttttcc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctcgcctcccctcctcccgctgtgtgtgtattagtgcaactcacattgttctggttttcc 355

                                                                       
Query: 241 tctaccaaatggccaaaaactaaagcagccaggcagacccacgttgaaaacttccagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tctaccaaatggccaaaaactaaagcagccaggcagacccacgttgaaaacttccagagg 295

                                                                       
Query: 301 gagacagatcagcccagcacatttcaggcacctaggtatggatcgaacagttgcagccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gagacagatcagcccagcacatttcaggcacctaggtatggatcgaacagttgcagccct 235

                                             
Query: 361 ggaagtgtgatgcattaatgtgctggagggctgc 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ggaagtgtgatgcattaatgtgctggagggctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 793
Length adjustment: 9
Effective length of query: 385
Effective length of database: 784
Effective search space:   301840
Effective search space used:   301840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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