BAC Information

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BAC

Clone NameMSMg01-341G16
Chromosome2 (Build37)
Map Location 150,739,431 - 150,739,920
singlet/doubletsinglet
Overlap geneGins1
Upstream geneOTTMUSG00000015750, LOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12
Downstream geneLOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341G16.T7 (MSMg01no341_g16.b1)MSMg01-341G16.TJ (MSMg01no341_g16.g1)
ACCAG455218AG455219
length738768
length of high quality
(start - end)
536 (64 - 599)491 (71 - 561)
definitionCHROMAT_FILE: MSMg01no341_g16.b1 PHD_FILE: MSMg01no341_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:40 2005CHROMAT_FILE: MSMg01no341_g16.g1 PHD_FILE: MSMg01no341_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATT
CCAAACTATACACAGTTACTTTGGTCTTTGTATTATTTTTGTCTCCATTT
CATCAATTCATATTTTGAACTTGATTCTAATTCTTTTGGATTTTGCTTGT
TCTAGTATTTCTATAACTGTGACATGCATCATTAGATCATTTGGACCACT
GTTGTGTTTGTATTAGCACAGGAATTTAAGGCTATAAATGTTTCTCTTAG
ACCCACATCTACTTCCCTTTTATCTTGCATCCCTAGGTGTTGTGGACACT
GACCACAAACCAACTGACCTATCAGCGAAGATGAAGAGATGGCAAGTATG
TCAGGACCTCAGGTCTAACACCTTTGAAGAAGCTGCCTTAACAGAACACT
ATGAAATATTAACAACCCTTGGCCAAGGAACATTTGGGGAAGTAAAACTG
GCGAGCCATCTCGTCACCCAGACTAAGGTAGCAATAAAAATCCTCCCCAA
AAGCAGGAAAAACCCTCTTGTCCAACCCGAAATTGAAATCATGAAATCCC
TTGACCATCCCCATATTATTAAACTTTTACACATAATCGACACCACCAGA
AACATTTTCATCGTTCTGGAGCATGCTGTGGTACGAGAGTTGATGATCAT
AACTGAAGATTTTGCCTATCTATCCTATGTGGAGTGCCCAAGCCGTTTTA
ACCCCTGGTCTATGTCCTTCCGTATTCGCCTTACAACG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTTGTAATGCAGGGTGTCCTCAAAATCG
GAGATCTACTTGCCTCTGCCTTCCAAGTGCTGGGATTACTGCCCAGTGGC
AGTCAGAATCTTAACTGGAGAGGCTTATGAGCTACTTGGATATATAAATT
AATAATCTGGGGCATAGAAAACCATAGGAACACAATGCATGCAGATAACA
GAAAAATCTTTACCAATAGAGTGAGGAACTAAACAAACAGCAGGGCTGTG
GTAAATGTGAGTCAGATGTCAGGTCTTAAACTCGATTCTACAAAGTTGTT
AATTAATCCATTCAACAGACATGCTGATAAATGTTTCTGGTATTTCCTTG
GTAAATAACATAGTCTAGATTTCTGTTCATGACCCTTCCTGTTTAGGAGA
CAGATCCTAAATACAAACGTGCATGATGGGAGATGTGCTCTAAAGGGAGG
CCACAGGAGAGGATAGTGCTAGGAGACCATACAGAGCATAACAAATGGAG
GAATTGAGAGAGTTCCTGAAGGAGAAGACATTTTAGCTTGAGGCTTTAAG
AAATAGATTTTACTCTCCGAAGCCCTTAATGGCGCGTAGAGAAAATCCAG
ACAAGGGGCCCTCAACAAAAGGCCAGGGTCCTTTGAAAGGCATTGTCTTC
CCAAAATCCTTTTTAAACCCAACTGGGGCCTGGAAATTAATAAAAAATAA
AAGCGCTTATTTCCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_g16.g1 MSMg01no341_g16.g1 CHROMAT_FILE:
MSMg01no341_g16.g1 PHD_FILE: MSMg01no341_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:40 2005
         (491 letters)



>mm_chr2_150739230_150740120
          Length = 891

 Score =  901 bits (466), Expect = 0.0
 Identities = 484/490 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctttgtaatgcagggtgtcctcaaaatcggagatctacttgcctctgccttccaagtgct 61
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 202 ctttgtaatgcagggtgtcctcaaaattggagatctacttgtctctgccttccaagtgct 261

                                                                       
Query: 62  gggattactgcccagtggcagtcagaatcttaactggagaggcttatgagctacttggat 121
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 gggattactgcccagtggcagtcagaatcttaactggagaggcttatgagttacttggat 321

                                                                       
Query: 122 atataaattaataatctggggcatagaaaaccataggaacacaatgcatgcagataacag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atataaattaataatctggggcatagaaaaccataggaacacaatgcatgcagataacag 381

                                                                       
Query: 182 aaaaatctttaccaatagagtgaggaactaaacaaacagcagggctgtggtaaatgtgag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaaaatctttaccaatagagtgaggaactaaacaaacagcagggctgtggtaaatgtgag 441

                                                                       
Query: 242 tcagatgtcaggtcttaaactcgattctacaaagttgttaattaatccattcaacagaca 301
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 442 tcagatgtcaggtcttaaactcgattctacgaagttgttaattaatccattcgacagaca 501

                                                                       
Query: 302 tgctgataaatgtttctggtatttccttggtaaataacatagtctagatttctgttcatg 361
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgctgataaatggttctggtatttccttggtaaataacatagtctagatttctgttcatg 561

                                                                       
Query: 362 acccttcctgtttaggagacagatcctaaatacaaacgtgcatgatgggagatgtgctct 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acccttcctgtttaggagacagatcctaaatacaaacgtgcatgatgggagatgtgctct 621

                                                                       
Query: 422 aaagggaggccacaggagaggatagtgctaggagaccatacagagcataacaaatggagg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaagggaggccacaggagaggatagtgctaggagaccatacagagcataacaaatggagg 681

                     
Query: 482 aattgagaga 491
           ||||||||||
Sbjct: 682 aattgagaga 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)