Query= MSMg01no341_i07.b1 MSMg01no341_i07.b1 CHROMAT_FILE:
MSMg01no341_i07.b1 PHD_FILE: MSMg01no341_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:48 2005
(529 letters)
>mm_chr2_16455863_16456793
Length = 931
Score = 901 bits (466), Expect = 0.0
Identities = 503/516 (97%), Gaps = 2/516 (0%)
Strand = Plus / Minus
Query: 16 gaattccaaagattttacagtgcttgagaggacagaagcattcaaaactgaccctgaact 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gaattccaaagattttacagtgcttgagaggacagaagcattcaaaactgaccctgaact 530
Query: 76 atttgtctttagtctataaactaggacaatccacaaagcaatgaataactaatgccggtt 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 atttgtctttagtctataaactaggacaatccacaaagcaatgaataactaatgccggtt 470
Query: 136 tacataccaaaggagaagatatttctatatcatactaaatgctagaaaacaattccaaga 195
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tacataccaaaggagaacatatttctatatcatactaaatgctagaaaacaattccaaga 410
Query: 196 taataaacaccattgaagcctaagcccagtcaaatactggacacacacaaaagaacaaca 255
||||||||| || || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 409 taataaacatcactgtagcctaagcccagtcaaatactggacacacacaaaagagcaaca 350
Query: 256 gggcttgatgaagaagctctttctgctccctcatcaaacagcacctgcattgct--acct 313
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 349 gggcttgatgaagaagctctttctgctccctcattaaacagcacctgcattgctctacct 290
Query: 314 ttccctcactgcatacttgaacaggggtttcaggtaagacaatgccaagacctagcaaat 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttccctcactgcatacttgaacaggggtttcaggtaagacaatgccaagacctagcaaat 230
Query: 374 gcctttgaactgcagccatggtttacaaagttttccacacactagcatcaactaaagaac 433
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 229 gcctttgaactgcaaccatggtttacaaagttttccacacactagcatcaactaaagacc 170
Query: 434 ttttaaaaattccaaaattcatgccattataccaggtgtactaaataatctgggagatag 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 169 ttttaaaaattccaaaattcatgccattataccaggtgtactaaataatctgggaaatag 110
Query: 494 cacattgttgtgatctaacatggaaatagcatactg 529
|||| |||||||||||||||||||||||||| ||||
Sbjct: 109 cacactgttgtgatctaacatggaaatagcacactg 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 931
Length adjustment: 10
Effective length of query: 519
Effective length of database: 921
Effective search space: 477999
Effective search space used: 477999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_i07.g1 MSMg01no341_i07.g1 CHROMAT_FILE:
MSMg01no341_i07.g1 PHD_FILE: MSMg01no341_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:48 2005
(317 letters)
>mm_chr2_16260371_16261089
Length = 719
Score = 507 bits (262), Expect = e-148
Identities = 295/314 (93%), Gaps = 16/314 (5%)
Strand = Plus / Plus
Query: 5 gttgtagagtgatggttatatgacagatatatgacaaattagggttaacatttgctacca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gttgtagagtgatggttatatgacagatatatgacaaattagggttaacatttgctacca 264
Query: 65 ggggagccttatcttgaatcccgaactcacataaatacacaagttttaggagtccaggtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggggagccttatcttgaatcccgaactcacataaatacacaagttttaggagtccaggtg 324
Query: 125 atatttcttgtaaaaa-ggatagtaaaagcataaaaaaattagaactggccaaatgtaat 183
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 atatttcttgtaaaaaaggatagtaaaagcataaaaaaattagaactggccaaatgtagt 384
Query: 184 gaaagaaccactggaatgcagttagaggcctgcattttaaaaagctgttgggat-atttc 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 gaaagaaccactggaatgcagttagaggcctgcattttaaaaagctgttgggattatttc 444
Query: 243 caaagagctaaagcaggaagagaaaacagcaagtaaatgcaacaaacgctgaaatggggg 302
|||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 445 caaagagctaaagcaggaagagaaaaca-------------acaaacgctgaaatggagg 491
Query: 303 ggggggggaataat 316
||| ||||| ||||
Sbjct: 492 gggagggga-taat 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 719
Length adjustment: 9
Effective length of query: 308
Effective length of database: 710
Effective search space: 218680
Effective search space used: 218680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
