BAC Information

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BAC

Clone NameMSMg01-341P15
Chromosome2 (Build37)
Map Location 167,133,432 - 167,133,794
singlet/doubletsinglet
Overlap geneB4galt5
Upstream genePpia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951
Downstream geneSlc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341P15.T7 (MSMg01no341_p15.b1)MSMg01-341P15.TJ (MSMg01no341_p15.g1)
ACCAG455640AG455641
length834780
length of high quality
(start - end)
289 (43 - 331)364 (71 - 434)
definitionCHROMAT_FILE: MSMg01no341_p15.b1 PHD_FILE: MSMg01no341_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:22 2005CHROMAT_FILE: MSMg01no341_p15.g1 PHD_FILE: MSMg01no341_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCTGGTCCAATATTTATTCTTGTTTTGTTTTTTTTAACTTTACTTTT
TTATTTTATGTGAATGAGTGTTTTGTCCTCATGTATGTCTGTGTACCACA
TGCATACAGTTCCCAAAGCCAGAAGAGGATCAGACCTGTTAGAACAGGAC
TAACAGACTAGTTGAGCCACCATGTGGGTATTGGGAATTGAACCCGGATC
CTACGAAAAGAAGCCTGTGTTCTTAGCTGTTGAGACATCTCTCCAGTCCC
CCAATATTTATTTATTTGGGGGGGAGTTGCTTTTTCCTATCTCCCCCTTT
TTTTTTTTCCTTCTTTTTCCTTCTTCCCTTTCCCTGTTGTTCTTCCTTTT
TTTCTTTTTTTTCCTCCTCTTCCCCTTTTCTTTTTTTTTTTTCTTTCCTT
TCTCTTCCATTTGTCCCTCCTCCCTTTTTCTCTTCCCTTTTTTCCCTTCT
CTTTTATTTCTTCTTTCCTACTTTCTTTTTTTTCTTTTTCTCTTCGTCTG
CCTCCATTCATTCTTTTATCCCCCCTTTCCCCTTTTCCCCTTTTACCTCT
CTTTTCTCTTTTCCCCCCTTCTTCCCCTCCTCTTTTTTCCTTCTCCCCCC
CTTTTTATAACCTTATTTTCCCCCCTTCTTTTTCTTTTTTTTCCTCTCTC
CTTTCTTTTTCCTTTTCTCCTCGCTCACTTTTCCCCTTTTCCCCCTTTTT
CTTTTTTTTCTTTTTTTCTCCCCCCTTTTTTCCTTTCTTTTTTTTTTTTC
CCATTTTCCCCCTCACCCGCTTTTATTCCTTCTT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCAGAGGAAGCGAGGCAGCACATTTGGCT
CGTCAGCTCCATCGTAAGCACAGTCGGCTGCCAGCCTCTCCTCCTCCACC
AGTGAGTGAGGATTCTGACTTAAGGTGGCCACACTCAAAGCCCCAAAACC
ACGACACCATGACAATCAGTGCTAGGGACGCCAGGTGCGGGGGCTTTAAT
CCCAGCACTTGGGAAGTAGAGGCAGGAGGATCTTTGTGAGTTCCAGGCCA
GCCTGCTCTACACGGTGAATTCCAAGATAGCTAGGAATACTATCACTGGG
ATTAAAGGCATGGCTTTAATCTTTTTTTTAAAAGATTTATTATTATTATT
TTTTTAATGTAAGTACACTATTGCTGTCTTCAGATACTATAAGAGGGCAT
TGGATCTCATTACAGATGGTTGTGAGCCACCATGCGACTGTTGGGAATTG
AAACCACGACACCCGTTACAAAAATTACCGCTCCCTTTCCATTGTTCCCT
CCCTCCCTCCCTCATTTTTTACTCTATCCATTCTTTTCTTCCTCCTTCTT
TCTTTCTTTCTTATCCCCTTTATTTTTCCCCCGCTTCACTCTCTTTTTTT
TCTTCTTTCTCCCCTTTTTATTTTTCTTTCTATCTTCCGTCTCCCATTTT
CTTTCTTTCCCCCACTACCTTTTTTCTTATCTTTATGCCCTACCTTCCTC
CGGCCCATTTCCTTCCTTTTCCCTTACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_p15.g1 MSMg01no341_p15.g1 CHROMAT_FILE:
MSMg01no341_p15.g1 PHD_FILE: MSMg01no341_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:22 2005
         (364 letters)



>mm_chr2_167133232_167133994
          Length = 763

 Score =  634 bits (328), Expect = 0.0
 Identities = 355/364 (97%), Gaps = 1/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagaggaagcgaggcagcacatttggctcgtcagctccatcgtaagcacagtcggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 201 atcagaggaagcgaggcagcacatttggctcgtcagctccatcggcagcacagtcggctg 260

                                                                       
Query: 61  ccagcctctcctcctccaccagtgagtgaggattctgacttaaggtggccacactcaaag 120
           || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ccggcctctcctcctccacca-tgagtggggattctgacttaaggtggccacactcaaag 319

                                                                       
Query: 121 ccccaaaaccacgacaccatgacaatcagtgctagggacgccaggtgcgggggctttaat 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccccaaaaccacgacactatgacaatcagtgctagggacgccaggtgcgggggctttaat 379

                                                                       
Query: 181 cccagcacttgggaagtagaggcaggaggatctttgtgagttccaggccagcctgctcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cccagcacttgggaagtagaggcaggaggatctttgtgagttccaggccagcctgctcta 439

                                                                       
Query: 241 cacggtgaattccaagatagctaggaatactatcactgggattaaaggcatggctttaat 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 cacggtgaattccaagatagctaggaatactatcactgagattaaaggcatggctttaat 499

                                                                       
Query: 301 cttttttttaaaagatttattattattatttttttaatgtaagtacactattgctgtctt 360
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttttttaaaaaagatttattattattatttttttaatgtaagtacactattgctgtctt 559

               
Query: 361 caga 364
           ||||
Sbjct: 560 caga 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 763
Length adjustment: 9
Effective length of query: 355
Effective length of database: 754
Effective search space:   267670
Effective search space used:   267670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)