BAC Information

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BAC

Clone NameMSMg01-342A21
Chromosome2 (Build37)
Map Location 116,424,008 - 116,424,245
singlet/doubletsinglet
Overlap genenone
Upstream geneBC052040, Mrg1, G630016G05Rik, 2810405F15Rik, LOC433464
Downstream geneTmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342A21.T7 (MSMg01no342_a21.b1)MSMg01-342A21.TJ (MSMg01no342_a21.g1)
ACCAG455698AG455699
length717740
length of high quality
(start - end)
238 (64 - 301)415 (61 - 475)
definitionCHROMAT_FILE: MSMg01no342_a21.b1 PHD_FILE: MSMg01no342_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:28 2005CHROMAT_FILE: MSMg01no342_a21.g1 PHD_FILE: MSMg01no342_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTAAACGACTCCTATTTTCAGAAAATCCGCGGAATTCTTTTAATTA
CTTAAATGTTGGNTTTGGAGGTCCTAACTACCCCTCATCAGGGCCTGAGA
CATCACTGAACAATTTTATATACTCCTTTCTCTAAAAGAAATGTGCAATT
TAGACTTAATATAAATGCAGCATCTAATTAAATTAAATCACATGAACTTG
CTGATATTCAACCATTTCTGACCTATAAAAACAGCATCTTCAACTAATAT
TACCAGTGCTCTCTTCTCCTTTAACAAGTACACTTAATACCGTGTCTCAA
ATTNCTTTTCCCTTATCCAACTCCAATTGATTGAGGAGTTTGCAACACTC
TTTCAGTGTTAATAAAGATGTCACAGTGTCTCTCTCTCTCTCTCCTTGTG
TGTGTGTGTGCATGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTG
TTTTNTNNTTTTTTTTTTTNNTTTTTTGTTTTNGCGTTTTCTTTATTTCC
TCNTTTCTCCCCTTTTTCTCCTTCTTCCCCTTTTCCTCTCCCTTTTCTGT
CTTTCTCTTTTCTTTTTTCCCGCTCCCCCCCCTCTTGTTTCCCCTCTTTT
CCCCCCCTTTTTCGTTTTCTTGGTCCTTTTTTTTTTTCTTTTCCTCGTTT
CTTCCCCCTTTTTCCTCCCTCCCTCTTCTTCCCCCCGCCCCCCCCTTCTT
TTTTTCCTTTCTCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTT
AAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGA
AGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAG
TAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTT
GTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCC
TCTATCATCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTC
AGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTT
ATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGA
TCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTG
GAGTCGAAGATGTCGCAGCCTCATAAGCTCTGTGGTTCTTGCCTGGAATT
TGCCTGGTTTGCTGGAACTGATTATGTTTCTTTCCCTAAAACCTTGTTGA
TCTCTCTTGCCTGGCCATATATTTTTTGTCTCTCTTGTTTTTTCATGTTG
TTTTCCGTTGCCCGGCTTCCCCCTGTTTTCCCTCTTTACTATTTCCTCCT
TCCTCTCTTGGGGAACACCCCCCCCTTTTTTTTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_a21.b1 MSMg01no342_a21.b1 CHROMAT_FILE:
MSMg01no342_a21.b1 PHD_FILE: MSMg01no342_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:28 2005
         (238 letters)



>mm_chr2_116423808_116424445
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggaggtcctaactacccctcatcagggcctgagacatcactgaacaattttatatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttggaggtcctaactacccctcatcagggcctgagacatcactgaacaattttatatac 379

                                                                       
Query: 61  tcctttctctaaaagaaatgtgcaatttagacttaatataaatgcagcatctaattaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcctttctctaaaagaaatgtgcaatttagacttaatataaatgcagcatctaattaaat 319

                                                                       
Query: 121 taaatcacatgaacttgctgatattcaaccatttctgacctataaaaacagcatcttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 318 taaatcacatgaacttgctgatattcaaccatttctgacctataaaaacagcagcttcaa 259

                                                                     
Query: 181 ctaatattaccagtgctctcttctcctttaacaagtacacttaataccgtgtctcaaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctaatattaccagtgctctcttctcctttaacaagtacacttaataccgtgtctcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)