BAC Information

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BAC

Clone NameMSMg01-342G19
Chromosome2 (Build37)
Map Location 151,839,419 - 151,839,614
singlet/doubletsinglet
Overlap genenone
Upstream geneNanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik
Downstream geneScrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342G19.T7 (MSMg01no342_g19.b1)MSMg01-342G19.TJ (MSMg01no342_g19.g1)
ACCAG455981AG455982
length738736
length of high quality
(start - end)
244 (60 - 303)198 (67 - 264)
definitionCHROMAT_FILE: MSMg01no342_g19.b1 PHD_FILE: MSMg01no342_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:56 2005CHROMAT_FILE: MSMg01no342_g19.g1 PHD_FILE: MSMg01no342_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGGCCGCTATACGACTCACTATTCCAAGAGGAGCGCGGAATTCTCACCT
TCCCGAAACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGT
GGATGTGGAGAAAGAGGAACACTACTCCATTGTTAGTGGGAGTGCAGGCT
TGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACA
TAGTATTTTTGTGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATCTACACCATGTAGTACTACTC
AGCTATTTAAAAGAATGAATTTATGAAAATTCCCAACCAAATGGAGGGAC
CTGAAGGGCATCATCTTTCCCAAAGAAACTCCCCCCAAATTGTTTCCCTG
AAAAAGGGAAAATAACCCCCCCCCCTAGATCCCCCCATATTTGAAACAAT
TTTCTACGCCCCTGGCCCCCCTAACAAAGGAAACAGAAATTGGTACCCCC
TGCCCTTTCCTTTTTTTTGGTAGACACCACCCCCGCCG
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCAGAGGGATTCTGTGAGAAAGGAACAAAGAA
AGCTGAGGGTAGAAGCCCACTTCGTGGAAGAACCTATCACAGAAGGAGAC
AAGAGTGGCCTCTGGCCCTGGCATGGGGCTAAACATGGAAGGCCCTTTAA
AGCCATGGTGCTGATGGCTGACAGGGCAGATCTCTGGGGAGATGGGTAGG
TAGGGGTGCTTGNNTGNANCNNNCCCNNNNANNGNNNGNGNCGGNNNCNN
NGGNGNGNNCTGGNNTCCNNCGCCNTCCTGGCCTGCNTTTCTGTCTCCTT
CTTCTTTGGCCCTCTTTCTTCTGGGTGCNTCTTTGGCCGTGCTCTGTGTC
CTTTTCCCTCCTTTTTTCTTGTTTTTTTTCCGCCCGCCTTCTCCTTGGGT
GTGTGTCCCCCCCTGCCCGTTGCTTTCTTTCCCTTTCCCCTCTTTCTTTC
GCCCCCGGGTTTTTGTCTCCTTCCCCCTTTTCTCTTTTCTTTTTTTCCCC
CCTGTCCTTCCCCCCTTTTGTCTTGTCCTCCCCCCCCCTCTCCTCTCTCC
CGTTTTTCTCCTTTTGCCTTTGCCCCTCTTCCTTCCTTCCTCTTGTTTCC
TTTCCCTGTTTCGCCTCTTCTTCCCGTTTTTCTTTCCCTCTCTTCCCCTT
TGCTCCCNCCCCCCCCCCCTTTCTTTTTTTGCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_g19.g1 MSMg01no342_g19.g1 CHROMAT_FILE:
MSMg01no342_g19.g1 PHD_FILE: MSMg01no342_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:56 2005
         (198 letters)



>mm_chr2_151839219_151839816
          Length = 598

 Score =  348 bits (180), Expect = e-100
 Identities = 192/196 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcagagggattctgtgagaaaggaacaaagaaagctgagggtagaagcccacttcgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 396 tttcagagggattctgtgagaaaggaacaaagaaagctgagggtagaagcccactttgtg 337

                                                                       
Query: 61  gaagaacctatcacagaaggagacaagagtggcctctggccctggcatggggctaaacat 120
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 336 gaagaacctatcacagaaggaggcaagcgtggcctctggccctggcatggggctaaacat 277

                                                                       
Query: 121 ggaaggccctttaaagccatggtgctgatggctgacagggcagatctctggggagatggg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggaaggccctttaaagccatgatgctgatggctgacagggcagatctctggggagatggg 217

                           
Query: 181 taggtaggggtgcttg 196
           ||||||||||||||||
Sbjct: 216 taggtaggggtgcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)