Query= MSMg01no342_h20.b1 MSMg01no342_h20.b1 CHROMAT_FILE:
MSMg01no342_h20.b1 PHD_FILE: MSMg01no342_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:01 2005
(522 letters)
>mm_chr2_29257053_29257978
Length = 926
Score = 942 bits (487), Expect = 0.0
Identities = 511/521 (98%), Gaps = 4/521 (0%)
Strand = Plus / Minus
Query: 6 ggaattccaccattgccccactggctctgcacagggcccatgtgaatgttcagtagcaat 65
||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggaattctaccaatgtcccactggctctgcacagggcccatgtgaatgttcagtagcaat 667
Query: 66 atgctgagagtgtgctgctgtgtcagatgcagtacacagggctacatgtgactagaaacc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 atgctgagagtgtgctgctgtgtcagatgcagtacacagggctacatgtgactagaaacc 607
Query: 126 aaaagtagtatctgcttttaggtcaagattttcatctagtgaaaaccctgaggaacagag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aaaagtagtatctgcttttaggtcaagattttcatctagtgaaaaccctgaggaacagag 547
Query: 186 acttcccttgtcaggaacagtggctagcctgtggtt----aaaaaaaaaaaaaaagttaa 241
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 546 acttcccttgtcaggaacagtggctagcctgtggttaaaaaaaaaaaaaaaaaaagttaa 487
Query: 242 cattaatgatacacaagtttgttagttagacttctctaccttgagaagaatcctgagaaa 301
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 486 cattaatgatacacaagtttgttagttagacttcacaaccttgagaagaatcctgagaaa 427
Query: 302 gcaagtatagggaggaaagaccaacttctgtccacagtgagcctgctcctcactgtaggc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gcaagtatagggaggaaagaccaacttctgtccacagtgagcctgctcctcactgtaggc 367
Query: 362 ctgagtgaggcagaatgtgtggtagtaggggcatgtggaggagacctgtcacttcaaggc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctgagtgaggcagaatgtgtggtagtaggggcatgtggaggagacctgtcacttcaaggc 307
Query: 422 agcaaaatatgagagaggcagaggacaagataccatctttcccagggatgtccccaataa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agcaaaatatgagagaggcagaggacaagataccatctttcccagggatgtccccaataa 247
Query: 482 cctacctcctctaactaggtcacacctattgcctctccttt 522
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 246 cctacctcctctaactaggccacacctattgcctctccttt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 926
Length adjustment: 10
Effective length of query: 512
Effective length of database: 916
Effective search space: 468992
Effective search space used: 468992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_h20.g1 MSMg01no342_h20.g1 CHROMAT_FILE:
MSMg01no342_h20.g1 PHD_FILE: MSMg01no342_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:01 2005
(423 letters)
>mm_chr2_29049032_29049854
Length = 823
Score = 787 bits (407), Expect = 0.0
Identities = 419/423 (99%)
Strand = Plus / Plus
Query: 1 tccctgagttattttcctggggcttccacagcagagactctggatttgggggagttgcag 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tccctcagttattttcctggggcttccacagcagagactctggatttgggggagttgtag 260
Query: 61 gaaaggggtggggcacccctgtttggagatccacctaccagatggtggccagcagcctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaggggtggggcacccctgtttggagatccacctaccagatggtggccagcagcctgg 320
Query: 121 ctgacggtaaaattgggggagcatacaaggaaagaacagactgggaagagtggccccaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgacggtaaaattgggggagcatacaaggaaagaacagactgggaagagtggccccaat 380
Query: 181 accgagtctttaaaccttttctgtggtctcctttctttatccaaacctttggagtgtctg 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accgagtctttaaaccttttttgtggtctcctttctttatccaaacctttggagtgtctg 440
Query: 241 tcaacacaggaagcaagcaggcagaggcagctgtgaagtcgctttactgtgggcttgtac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaacacaggaagcaagcaggcagaggcagctgtgaagtcgctttactgtgggcttgtac 500
Query: 301 accatcagccaccctcagtgaccacctcccacccgagtccgtcctcacaagggacagtgg 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 accatcagccaccctcagtgaccacctcccacccgagtctgtcctcacaagggacagtgg 560
Query: 361 atacaaacaaaatagttctctagaaaacaaggtttccacccctccccgccctttgtccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atacaaacaaaatagttctctagaaaacaaggtttccacccctccccgccctttgtccta 620
Query: 421 ccc 423
|||
Sbjct: 621 ccc 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
