Query= MSMg01no342_m22.b1 MSMg01no342_m22.b1 CHROMAT_FILE:
MSMg01no342_m22.b1 PHD_FILE: MSMg01no342_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:25 2005
(244 letters)
>mm_chr2_145775416_145776059
Length = 644
Score = 472 bits (244), Expect = e-138
Identities = 244/244 (100%)
Strand = Plus / Minus
Query: 1 tgccgctagtaaagtaagaggattggtatcatgataaactacaagcaaattaaatgcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgccgctagtaaagtaagaggattggtatcatgataaactacaagcaaattaaatgcttc 385
Query: 61 atgtcatttgaaaactatttcatagggcatctttcatggttgccatctataagatcccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgtcatttgaaaactatttcatagggcatctttcatggttgccatctataagatcccct 325
Query: 121 ccactcaccggatgatttctttgaggcagccagtggcatattcatccacagccacaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccactcaccggatgatttctttgaggcagccagtggcatattcatccacagccacaaaga 265
Query: 181 agtgcataaacagcgtgttcagaggctgcaggggtaaaaaagacgggcgtgaaagagtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgcataaacagcgtgttcagaggctgcaggggtaaaaaagacgggcgtgaaagagtgg 205
Query: 241 gccc 244
||||
Sbjct: 204 gccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no342_m22.g1 MSMg01no342_m22.g1 CHROMAT_FILE:
MSMg01no342_m22.g1 PHD_FILE: MSMg01no342_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:26 2005
(419 letters)
>mm_chr2_145584889_145585707
Length = 819
Score = 696 bits (360), Expect = 0.0
Identities = 410/441 (92%), Gaps = 22/441 (4%)
Strand = Plus / Plus
Query: 1 atgtccccgggagtagttctccaccaaagtcttgcaagggttgctatggagatatttcag 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 atgtccccaggagtagttctccaccaaagtcttgcaagggttgctatggagatatttcag 238
Query: 61 gtccctctccctttccagtgtctgaaacttgtgtttgacactgttttccgggtcctggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gtccctctccctttccagtgtctgaaacttgtgtttgacactgttttccgggtcctggtg 298
Query: 121 agactgagctgcactgtggtgttcattggtttggatacccatcccgctcttgtcccgctc 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agactgagctgcactgtggtggtcattggtttggatacccatcccgctcttgtcccgctc 358
Query: 181 acttttccactcgccgacca----------------------agaaaccacctgccttct 218
|||||||||||| ||||||| ||||||||||||||||||
Sbjct: 359 acttttccactcaccgaccagtatttcccggatcaccttccaagaaaccacctgccttct 418
Query: 219 tgttctagccatctgcaacattgtatagagtgctggctcaggggctagcatctagcaagc 278
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 419 tgttctagccatctgcaacatagtatagagcgctggctcaggggctagcatctagcaagc 478
Query: 279 ctcaggttgttactctctctgctgttagtaggaaacaaggagatcaaggaaaagaaagcc 338
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 479 ctcaggttgttactctctctgctgttagtaggaaacaaggagatcaaggaaaggaaagcc 538
Query: 339 atctcatctacccgttgctgttcgccaaccacaggaagatcccactgtgggtggngccgg 398
||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 539 atctcatctacccattgctgttcgccaaccacaggaagatcccactgtgggaggggccgg 598
Query: 399 ctgtgtgggagcatcgtctgt 419
|||||||||||||||||||||
Sbjct: 599 ctgtgtgggagcatcgtctgt 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
