BAC Information

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BAC

Clone NameMSMg01-342O04
Chromosome2 (Build37)
Map Location 85,747,516 - 85,747,853
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024
Downstream geneOlfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342O04.T7 (MSMg01no342_o04.b1)MSMg01-342O04.TJ (MSMg01no342_o04.g1)
ACCAG456330AG456331
length721803
length of high quality
(start - end)
338 (63 - 400)---
definitionCHROMAT_FILE: MSMg01no342_o04.b1 PHD_FILE: MSMg01no342_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:31 2005CHROMAT_FILE: MSMg01no342_o04.g1 PHD_FILE: MSMg01no342_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCAATACGACTCACTATTTTCAAAGAAGGCGCGGAATTCCAGGATTTC
CTCCAAAAGGGTGAGAACTTATATCAAAACACACACACACACACACACAC
ACAAGTGCACACAAGTTCACACACAGGAATGCACGCACAAGCATACATAG
CATACATATACATACATACATACATACATACATACATACATACATACATA
CATACAAAAAGTACTTATATATACACATACATAGGGAGCTTAGAAAAGAG
CATGTCTTTGATCAAAGCATGATTCACTTGCCGAGAAGATCCTGGGCTCA
GTATATTATCAGGTTTCAGGATAAGCCCCCCAAAAGGAGCTTCTTATAAT
GAAGAACAAAGGAGCTTCACCATTTGTTTCTCTCGTCAGTTTTACTCAAA
TATTCCCACCTTTCTTTTCTCAGGAGAAACTTATAAAATAAATTAAATGC
ATGTTGCTGTGAGAATATACATTCCTATTCCAGATTCTATGGTTTTGCGT
TCTGAAAAGCTAAAAGGTAAGTCACAAAAACTATTATGCAGAGAAACTAG
GACTCATAATATAAAATGACTCTAAATCGGGGCCTTAGCATAGATGTCTG
GACCTCTCTCCTTGCAAAATATGTCTGTTCCCCCAGATCAACCGCTGGCC
TGCCTGTCTCTGACACGGAGATTCTTGACTCTTTCTCCCCATGCTAATAA
TTCATCGAAATACTACTTAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXGTGTCCTTAAATTGCCCATGTCTGTAACTACTGATATATATATATA
CATACCTATATATCTATCTCATATATATATATCTATATATATCTGTGCGT
CGCCATCCCCCCCCCGCGGGCCGTTCCCCGCTCCCCGTTCGCCCCCCCGC
CCCCCCCCCCCCCCCCCTTCCCCCGCCCCGCCCTCGTGCCCCGTCCCGCC
CCATCCCCCCCCCCCCCGCCCCCCCTTCCCCCCCCCCCCGCCCCCCCCCG
CCTCTCTTTTGTGGCCCGCGCCCTCCGGCCCCCCCCCCCCCCCCCTCTCC
TCCCCCCCCCCCCCCCTCTTCCTTTCTCCCCCCTCCCCCTCCCCCTTCTT
TTTCCCCTCCCCCCCCCCCCCCCCTCTCCCCTCCCCCGCCCCCCCCCACC
CTCCCCGCCCCGCCCCCCCGTCCCCCCGTCCCCTCCGCCCCCCCGCCCCC
CCCCCGGCGCTGCCCGTTTGTTTTTTTTTTTCTGTCCCGTCCGCCCCCCC
CCCGCCCGCCCCTCTCCGGCCCCTCCTACCCGCCCCTGTCATGCCGTGCC
CCTGGCCTCACTCCGCCCCCCCCCCCCCCCCCCCCTCTCCCCCCCTTCTC
TCTTCCCTGCCCCCCCCCGTCTCCCCGCCCCCCGCCCCCCCCCCCTCCTC
TCTGTTTTCCCCGCGCGTTCGCTCCCCCCCTCCTCCCCCCCCCCCTTCTA
TTAGCCCCCCTCTGCCTCCCTCTCCCCCCCCTCCCCCCCGCCCCTCGTCC
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_o04.b1 MSMg01no342_o04.b1 CHROMAT_FILE:
MSMg01no342_o04.b1 PHD_FILE: MSMg01no342_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:31 2005
         (338 letters)



>mm_chr2_85747316_85748053
          Length = 738

 Score =  569 bits (294), Expect = e-166
 Identities = 326/346 (94%), Gaps = 16/346 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaacttatatcaaaacacacacacacacacacacacaca--------agtgcacacaa 52
           |||||||||||||||||||||||||||||||||||||||||        |||||||||||
Sbjct: 201 gagaacttatatcaaaacacacacacacacacacacacacacacacacaagtgcacacaa 260

                                                                       
Query: 53  gttcacacacaggaatgcacgcacaagcatacatagcatacatatacatacatacataca 112
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcacacacaggaatgcacgcacaagcatacatagcatacatatacatacatacataca 320

                                                                       
Query: 113 tacatacatacatacatacatacatacatacaaaaagtacttatatatacacatacatag 172
           ||||||||||||||||||||||||        ||||||||||||||||||||||||||||
Sbjct: 321 tacatacatacatacatacataca--------aaaagtacttatatatacacatacatag 372

                                                                       
Query: 173 ggagcttagaaaagagcatgtctttgatcaaagcatgattcacttgccgagaagatcctg 232
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agagcttagaaaagagcatgtctttgatcaaagcatgattcacttgccgagaagatcctg 432

                                                                       
Query: 233 ggctcagtatattatcaggtttcaggataagccccccaaaaggagcttcttataatgaag 292
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggctcagtatatcatcaggtttcaggataagccccccaaaaggagcttcttataatgaag 492

                                                         
Query: 293 aacaaaggagcttcaccatttgtttctctcgtcagttttactcaaa 338
           || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aagaaaggagcttcaccatttgtttctctcgtcagttttactcaaa 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)