XXXXXXXXXXXXXXXXXXXXXXTCAGAACGGAGCGCGCGGAATTCCAGAG
TTACAAACACACCTGTTATTATATTGCTACAACTCAGGTCCAACTTGTGA
TCTTTGTAGTGTATATAAGTCACTCCTGTTTGCAGTTGATATGAAACTTT
CATGATCTCCTGATTGGATGCTAAATAGTATTTCAGTGTCCCCTGTCACA
CATGATGGAAGAAGAAAGAGGTAAATTCACTGAAACAACCATGTAGCAAG
TGGAGAAAAGAGAGTGATTTGTAGTGGTCAAGGGCCCTCAGCATAGCCTA
TGTTTTTTTTTCTAAAGTGACAAGGAAGGCTTCCCCCTTTTGACTGGAAA
GGGAGGCAATACTAACATCTATTTTCTGATGCCACATCTTAGAGACAGGT
AACACCCCTCCTAGTGTAACAGAGCTGCGGTTTCAGTAGCATCTATAATT
CTCAGGTAACTTTGTCAACTGACTTAGAGATTGATACTTGACAATAGCCT
CTCCTCCCCTCCCCTCTTCTGTCTTTCTCCCCTATCCCCTCCCCAATCCA
TCTCCACTCTGCCCTTCCCACCCCTTCCCTCTCCTTTCTACCTCCCGTCT
TTCCTCTCCACCTGTCCTCTTCCCTCTGTCTTTTCTTCCCCTCTCCTGTT
CTCCCTTCACCTCTCCTCAAAAATCCCTCTTACAGTTTTACAGAATATTT
GTGTTCTCTTTTTAACACCAG

GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCTCATTTTTTAATGGGGT
TATTTGATTTTCTGGAGTCCACCTTCTTGAGCTCGTATCTCTAGCTGCAT
ATGTAGCAGAAGATGGACTAGTCGGCCATCATTGGGAAGAGAGACCCCCT
TGGTCTTGCAAACTTTATATGCCTCAGTACAGGGGACCGCCAGGGCCAAG
AAGTGGGAGTGGGTTGGTAGGGGAATGGGGGNTTTTNNNNTTTTTTTTTT
TTCTTTTTCTTTTTTNTTTTTTTCCTTTTTTCTTTTTNGCCCCTTTTTTG
TCTTCCTTTTTCCCTTTTTCCCTCTCTTTTCCCCGTTCCTTTTTTTTCCC
CTTTTCCCCCCCCCTTTGTCGTCCTTTTTTTTTTTCCCGCCCCCCTTTTT
GTTTCTTGTTTTTTCTCCCCCCCGCCTCCCGTTCCTCTTCTCTTCCTGTT
TGTCCGCGCGTTGCTGTTCTCCCCCCCCTTTTTTTTCCTCCCTCTCTCCT
CTTTTTTTCTTTTTTTTTTTTTTTCTCCCCTCTGCCTCTCCCCTCTTTTT
TTTTTCTTTTTTTTCTTCCCCCTCTCTTTTTCCGCCGCCTTGTTGTGTCC
TCTGTTTTTTTTGCCCCCTTTTCGCTTTGTTTTTTTTTTTCCCCTTTCCT
GTTCGCCCCTCTTTCTTCTCCTTTTTTTTTCTTCCTCTTCTTTTTTCTCT
TCTCCCCCCCCCTCTTCTTGTTTTTCGTTG

Query= MSMg01no342_o11.b1 MSMg01no342_o11.b1 CHROMAT_FILE:
MSMg01no342_o11.b1 PHD_FILE: MSMg01no342_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:33 2005
         (545 letters)



>mm_chr2_45458821_45459763
          Length = 943

 Score =  932 bits (482), Expect = 0.0
 Identities = 528/544 (97%), Gaps = 2/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttattatattgctacaactcaggtccaacttgtgatctttgtagtgtatataagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgttattatattgctacaactcaggtccaacttgtgatctttgtagtgtatataagtca 260

                                                                       
Query: 61  ctcctgtttgcagttgatatgaaactttcatgatctcctgattggatgctaaatagtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctgtttgcagttgatatgaaactttcatgatctcctgattggatgctaaatagtatt 320

                                                                       
Query: 121 tcagtgtcccctgtcacacatgatggaagaagaaagaggtaaattcactgaaacaaccat 180
           ||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 321 tcagtgttccctgtcacacatgatggaagaagaa--aggtaaattcactgaaacaaccat 378

                                                                       
Query: 181 gtagcaagtggagaaaagagagtgatttgtagtggtcaagggccctcagcatagcctatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtagcaagtggagaaaagagagtgatttgtagtggtcaagggccctcagcatagcctatg 438

                                                                       
Query: 241 tttttttttctaaagtgacaaggaaggcttcccccttttgactggaaagggaggcaatac 300
           ||| ||   ||||||||||||||||||||||  ||||||||||||||| ||||| |||||
Sbjct: 439 tttcttgggctaaagtgacaaggaaggcttctaccttttgactggaaaaggagggaatac 498

                                                                       
Query: 301 taacatctattttctgatgccacatcttagagacaggtaacacccctcctagtgtaacag 360
           ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||
Sbjct: 499 taacatctattttctgatgccacatcttagagacaggtaacattcttcctagtgtaacag 558

                                                                       
Query: 361 agctgcggtttcagtagcatctataattctcaggtaactttgtcaactgacttagagatt 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 559 agctgcggtttcagtagcatctataattctcaggtaacttcgtcaactgacttagagatt 618

                                                                       
Query: 421 gatacttgacaatagcctctcctcccctcccctcttctgtctttctcccctatcccctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gatacttgacaatagcctctcctcccctcccctcttctgtctttctcccctatcccctcc 678

                                                                       
Query: 481 ccaatccatctccactctgcccttcccaccccttccctctcctttctacctcccgtcttt 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccaatccatctcccctctgcccttcccaccccttccctctcctttctacctcccgtcttt 738

               
Query: 541 cctc 544
           ||||
Sbjct: 739 cctc 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 943
Length adjustment: 10
Effective length of query: 535
Effective length of database: 933
Effective search space:   499155
Effective search space used:   499155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)