BAC Information

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BAC

Clone NameMSMg01-343A10
Chromosome2 (Build37)
Map Location 146,412,501 - 146,570,317
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc24a3, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343A10.T7 (MSMg01no343_a10.b1)MSMg01-343A10.TJ (MSMg01no343_a10.g1)
ACCAG456436AG456437
length746760
length of high quality
(start - end)		509 (37 - 545)323 (70 - 392)
definitionCHROMAT_FILE: MSMg01no343_a10.b1 PHD_FILE: MSMg01no343_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:42 2005CHROMAT_FILE: MSMg01no343_a10.g1 PHD_FILE: MSMg01no343_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,569,855 - 146,570,317)(146,412,501 - 146,412,823)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCGAGGATCCGCGGAATTCA
ATTTGTTTCTCCTCAATGAATATAATGCAAAGTTATTAACAAAAAGGTCA
GGATCTCTGTGGAAAGCATACACACAGAGTGGGACACTGGTAATTAGTAT
ACATTTTGAATGTGCGGCTGTGCTGGCATACAGTAGAGGCAATCTTAACA
GATTAGATGTTAATAAACTTTTAAGTCTGTGTCCCTGCCTTTATAACAAT
AAACAAATAAACAAATACTTAAATAAAGAAATGTCACAAGTTATACCCCT
GTTCCTAGCACTAGAAAGTAAATACAATGATCGCTTAGGAAAGCCATACA
TATCGATGAATAAATAACCTTAACAAGGGCTTGATCAGAGCCATGCCCAA
GTCAAAGGTTTAGGATTTCTGATTGCAAATTGAGAAGCTGAGTACACTGC
CCTGGTATTATAGGGGCCACCTACATGGGCCACCGTTCTGAACCTAGAAA
TTCTATTTTCAAATGTGTAAAACAAGGCCTGCTAGGGATAACAGGGCTCA
TGTGTACATGATCCTGTGTGTGTGTGATTGCGTATGTATCCCCGCCCCCC
TCTATTTGCCATACTTTATAGGCTCCCCTATTTCTCTCATACTGTCTATT
GTCTCTTTTGTTGTTGCACTCCTTTCTGATTTTCTTTTTTTTCCCGTTTT
TCTCTCTCCATTACCCCTTCTTTTTCGTTTTTTTCTTCCCTCCCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATGAATAGCTCCTAAGCCTGGTATAAAGCA
TAAATGACCTGGTGGAAAATCCAAATAAAGCACATTCAGAAATGTACTCA
ATAATGTGATTGGTAAATTCTCATATCTTCCCAAATGAAAGGGAAGTGTG
GGTGGATTTGGGCAGGGCAGTCTGGGGGTATCCTTGTGAAATAAGCATTA
TGGTGGCCATGGGATGTGGTTAGGGCGATACTTTCAACCTCTCCACTTTG
TACATTTGGAGTCAGCTGTGCTCCCGTAGATCCCTCATCAAGTTCCTTTG
TCTTTAGGTACAGATGTCAACCCCCACTCCTTAGCCCCAGATGTGAAACT
TCCAAAGTCTCAAAGCATTGTTCAATACCCTAAGGGTGCATGGAAAGATA
GTCTCCCCCTGTTCGAAATGACTGGTCTATAGGAAACTGCTTGACTCTTT
GTTTCAGCCTCAATTATTCATCCTCCCCAGCTTCCTTGTTTTATTTTTTG
TTCCCCCCCCCGTTTTATAATTTTTCTCCTTCTCCTTCAAATTTTTTTTT
ATTCCCTCCCTCTTTCTCCTTTTTCTCTTACTGTTCTTACTTTTCTACCA
CATTGTTCTCACCCTCCCTTCCCTCTTTTTTCTCATTTCTCTTTTTTCTC
TCTCCTTTTTCCCCTCCCACCCTTACTATTCCTTATCTCCTCTCCTCCCA
CTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_a10.b1 MSMg01no343_a10.b1 CHROMAT_FILE:
MSMg01no343_a10.b1 PHD_FILE: MSMg01no343_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:42 2005
         (509 letters)



>mm_chr2_146569409_146570317
          Length = 909

 Score =  895 bits (463), Expect = 0.0
 Identities = 463/463 (100%)
 Strand = Plus / Minus

                                                                       
Query: 47  ttattaacaaaaaggtcaggatctctgtggaaagcatacacacagagtgggacactggta 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 ttattaacaaaaaggtcaggatctctgtggaaagcatacacacagagtgggacactggta 850

                                                                       
Query: 107 attagtatacattttgaatgtgcggctgtgctggcatacagtagaggcaatcttaacaga 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 attagtatacattttgaatgtgcggctgtgctggcatacagtagaggcaatcttaacaga 790

                                                                       
Query: 167 ttagatgttaataaacttttaagtctgtgtccctgcctttataacaataaacaaataaac 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ttagatgttaataaacttttaagtctgtgtccctgcctttataacaataaacaaataaac 730

                                                                       
Query: 227 aaatacttaaataaagaaatgtcacaagttatacccctgttcctagcactagaaagtaaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aaatacttaaataaagaaatgtcacaagttatacccctgttcctagcactagaaagtaaa 670

                                                                       
Query: 287 tacaatgatcgcttaggaaagccatacatatcgatgaataaataaccttaacaagggctt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tacaatgatcgcttaggaaagccatacatatcgatgaataaataaccttaacaagggctt 610

                                                                       
Query: 347 gatcagagccatgcccaagtcaaaggtttaggatttctgattgcaaattgagaagctgag 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gatcagagccatgcccaagtcaaaggtttaggatttctgattgcaaattgagaagctgag 550

                                                                       
Query: 407 tacactgccctggtattataggggccacctacatgggccaccgttctgaacctagaaatt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tacactgccctggtattataggggccacctacatgggccaccgttctgaacctagaaatt 490

                                                      
Query: 467 ctattttcaaatgtgtaaaacaaggcctgctagggataacagg 509
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctattttcaaatgtgtaaaacaaggcctgctagggataacagg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_a10.g1 MSMg01no343_a10.g1 CHROMAT_FILE:
MSMg01no343_a10.g1 PHD_FILE: MSMg01no343_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:42 2005
         (323 letters)



>mm_chr2_146412301_146413023
          Length = 723

 Score =  601 bits (311), Expect = e-176
 Identities = 320/323 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaatagctcctaagcctggtataaagcataaatgacctggtggaaaatccaaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaatagctcctaagcctggtataaagcataaatgacctggtggaaaatccaaataaa 260

                                                                       
Query: 61  gcacattcagaaatgtactcaataatgtgattggtaaattctcatatcttcccaaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 gcacattcagaaatgtactcaataatgtgattggtaaattctcatatcttcccaaatgag 320

                                                                       
Query: 121 agggaagtgtgggtggatttgggcagggcagtctgggggtatccttgtgaaataagcatt 180
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 agagaagtgtgggtggatttgggcagggtagtctgggggtatccttgtgaaataagcatt 380

                                                                       
Query: 181 atggtggccatgggatgtggttagggcgatactttcaacctctccactttgtacatttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtggccatgggatgtggttagggcgatactttcaacctctccactttgtacatttgg 440

                                                                       
Query: 241 agtcagctgtgctcccgtagatccctcatcaagttcctttgtctttaggtacagatgtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcagctgtgctcccgtagatccctcatcaagttcctttgtctttaggtacagatgtca 500

                                  
Query: 301 acccccactccttagccccagat 323
           |||||||||||||||||||||||
Sbjct: 501 acccccactccttagccccagat 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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