BAC Information

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BAC

Clone NameMSMg01-343F13
Chromosome2 (Build37)
Map Location 24,462,316 - 24,462,778
singlet/doubletsinglet
Overlap geneCacna1b
Upstream geneSh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938
Downstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343F13.T7 (MSMg01no343_f13.b1)MSMg01-343F13.TJ (MSMg01no343_f13.g1)
ACCAG456679AG456680
length767805
length of high quality
(start - end)		469 (30 - 498)294 (64 - 357)
definitionCHROMAT_FILE: MSMg01no343_f13.b1 PHD_FILE: MSMg01no343_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:09 2005CHROMAT_FILE: MSMg01no343_f13.g1 PHD_FILE: MSMg01no343_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTATACGACTCACTATATTCACAGGATCCGCGGAATTCTAGCACTT
GTTCAGTACGTCCTTCCTTCCTGCTTCCCCTCCATTTGCTTTGCGTCCTC
CCTGTATCCCATCATAATGATGCCTATATTATCTGCGTACTGTGTTGTTT
AATGTGATTTTCATTTTTATTTGCTGTTCCCTTTTTCATGTAGGGCAGTG
GTTCCATTAATGGGAGCCCCTTGATGTCAACATCCGGTGCTAGCACCCCG
GGCCGAGGTGGGCGGAGGCAGCTCCCCCAGACTCCTCTGACCCCACGCCC
CAGCATCACCTACAAGACCGCCAATTCCTCGCCTGTCCACTTTGCTGAGG
GTCAGAGCGGCCTCCCAGCCTTCTCCCCTGGCCGTCTCAGCCGCGGCCTT
TCTGAACACAATGCCCTGCTCCAGAAAGAGCCCCTGAGCCAGCCTCTAGC
TCCTGGCTCCCGAATTGGCTCTGACCCTTACCTAGGGCAGCGTCTGGACA
GTGAGGCCTCCGCCCAACCCTGTCTGAGGAAACACTCACCTTTGAAGAGC
ATNGGGCCACCAATTCTGGCCGTTCCTCTCGTATTTCCTATGGGCCTTCC
TCCACTTCCCCAATCTAACCTTTCTTTCGCGTAACCATTGGCTAAATCTT
GCTTTTGGTAATACCCAAATTCCGTCCTTTTCGTTGCTTTTTACCCCTTT
CCTCTTTCATATCATCAAGCGCTAAATCTCTTTCCTCTCTCCATAGAGTA
CCCCTCTTTTCCTTTTT

TAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAGGACACGGTGTTTGGAGGGCACAACAAAGCAGGTG
CACATGCAACCTCACAAGGACTGTGATGTGACAGTGTGCACAAGACCTGC
ACAAGCTCACGCCGGCAAGAGCCCATCGTGGAAGACAGAAAGAGCACTTG
AAGCTGAGGATCTATTGGTATTTGATTGCTGATAAGAAAGGAAATGTTAG
TTCTTTAATGGGGCAACATCTGGTTCTATTCTCAGAAGTAGTGGGCCAAC
AAAAACTTGACTCCATGGATTAACGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNN
NTTNNNNNNNNNNNTNNTNTNTTNNNNNNNTNNNTTTTTNNTNNNNTTTT
NNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTTTTTNTNTTNTTTTTTTTTTTTTTTTTTTTTT
NTTTNTTTNTTNNTNNTNNTTTTTTTTTNNTTTTTTNTNNTTTTTTTTTT
TTTTNNTNNNNTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTNTTTTTTTT
TTTTTTTTTTTTNTTTTNNTTTTTTNNNNNTTTTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTTTTNTTTTTTTNNNTTNTTTTTTTTTTTTTTTTTTTTT
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_f13.b1 MSMg01no343_f13.b1 CHROMAT_FILE:
MSMg01no343_f13.b1 PHD_FILE: MSMg01no343_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:09 2005
         (469 letters)



>mm_chr2_24462110_24462978
          Length = 869

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattctagcacttgttcagtacgtccttccttcctgcttcccctccatttgctttgcg 66
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 669 ggaattctagcacttgatcagtacgtccttccttcctgcttcccctccatttgctttgtg 610

                                                                       
Query: 67  tcctccctgtatcccatcataatgatgcctatattatctgcgtactgtgttgtttaatgt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcctccctgtatcccatcataatgatgcctatattatctgcgtactgtgttgtttaatgt 550

                                                                       
Query: 127 gattttcatttttatttgctgttccctttttcatgtagggcagtggttccattaatggga 186
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 549 gattttcatttttatttgctgttccctttttcatgtagggcagtggttccgttaatggga 490

                                                                       
Query: 187 gccccttgatgtcaacatccggtgctagcaccccgggccgaggtgggcggaggcagctcc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gccccttgatgtcaacatccggtgctagcaccccgggccgaggtgggcggaggcagctcc 430

                                                                       
Query: 247 cccagactcctctgaccccacgccccagcatcacctacaagaccgccaattcctcgcctg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cccagactcctctgaccccacgccccagcatcacctacaagaccgccaattcctcgcctg 370

                                                                       
Query: 307 tccactttgctgagggtcagagcggcctcccagccttctcccctggccgtctcagccgcg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tccactttgctgagggtcagagcggcctcccagccttctcccctggccgtctcagccgcg 310

                                                                       
Query: 367 gcctttctgaacacaatgccctgctccagaaagagcccctgagccagcctctagctcctg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcctttctgaacacaatgccctgctccagaaagagcccctgagccagcctctagctcctg 250

                                                      
Query: 427 gctcccgaattggctctgacccttacctagggcagcgtctgga 469
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gctcccgaattggctctgacccttacctagggcagcgtctgga 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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