BAC Information

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BAC

Clone NameMSMg01-343I18
Chromosome2 (Build37)
Map Location 38,873,063 - 38,873,472
singlet/doubletsinglet
Overlap geneGolga1
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l
Downstream geneA930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343I18.T7 (MSMg01no343_i18.b1)MSMg01-343I18.TJ (MSMg01no343_i18.g1)
ACCAG456831AG456832
length767774
length of high quality
(start - end)		376 (38 - 413)410 (65 - 474)
definitionCHROMAT_FILE: MSMg01no343_i18.b1 PHD_FILE: MSMg01no343_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:25 2005CHROMAT_FILE: MSMg01no343_i18.g1 PHD_FILE: MSMg01no343_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTA
ATGTGTTACAGTAGTTAGGGTTCTTCTCTGACAAGGTGGTCTGATTGGAT
GTTAAATGAAATTATGAACTAGACATGCAGGTCTTTAGGAGAAGAACATT
TCAAGCTGAGATTTCAGTAAGTGCCAAGGCAGCTATGCGTGGTATGTTGG
TATGTTTGAGAACAGCAAGGAGGCTGTGTGGCTGGAGTCAACTAGAGCAG
TAGGATGGTAGAGTGAAGAATGGCAGGAGAATCCTGGACATAGGGCTGAT
GGTCAGGTCATGTGAGACCTTAAAATCCATGCAAAGAGAATAGAACTACA
GGAGAAACGATGAAATCTGTCATGTTTTTAAGACATCACTTTGTTGTTTT
GGAAGTACACTGTATCTGAGCAGTGTGAATATGTGCAGTCCTTAAAAATG
AACAAGATTTGTGATTACGTCCAGTTTTTTAGGTGGACTGGTTGGCCATT
CCGTTTTCCCTATCGTTCATTTGTCTCTTGTCCCTCTTGCCTCCCTTCCT
CAGATTTTTCTTCACTCATTTTTTTTTACATTATTTTAACCTTTTCCTTT
TAACCCTCTTGTTCTCTTTCCTCCTCTTATTTTTCGTCCGCTCTCTATTA
TCCTCTTCGCTTTCCGTATAATCTTTCCCTCACCTCTTATATCTTTCGTT
TTGGTTCCTTCTACCCTTTTTTTTTTCGTTTTTGTCCTATATTTTTATCT
CTTTTCCCTCCCATTCT

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGAGCAAAGCTGGAGAAACTACTGCTTTAGAGAGCA
GGTACCACAGAAGGCAAGAAAAATTACAAAGGGGCATATGTCCTGGCACT
AGAAAGACTTGAAGCTCTGATTTTCATCTTTAAATGGATTTTATAATACA
GAAGACATGTTTAGAATAGCGAAGAACTTTTGCTATAAAAATAGTTTTAA
AATGGTTTACCAGCAACCCATCCAAGACGAGTACATTCATTAAGAAGGCA
ATTGAGTGTATTTGGTGCTATACGGAGAGATCATTCCGTCTGCTTGCTAG
TTTTCTCAGGACTGGAAAGTTGCATACTCATCAGTCCACACTGGCCCCGT
AACCTATGAGATGGACACATCTCAAGTTCTAGGTGGCTGGGGAAACAAAG
TGTAATGATACTTTCTTGAGAGGCAACAGTGCATGGAAACCAAACATGCT
AGTGGAAGGGGACTCCAAAGACCACCCTTGGAGTTGGTTTTTTTTGAAAG
AATATCTCCCCCCTTCCGCCTGGTACCCCCGGGTTCAAAATTAAATTTTC
CCGGGAATGGCCATCCCCGCCCTTTTTTATGGTCCTGGTAAAAAAACAAT
AAACTCTTCTCTCCTTGGTCAAAATCTGGTTATTTATTCTCCTCTGGTTT
ATCTTGTCTGCTGTCACCTATCCTTCTTTCCTTCATATTCTCTGTGAATA
TACACTTCCCTTCTGGTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_i18.g1 MSMg01no343_i18.g1 CHROMAT_FILE:
MSMg01no343_i18.g1 PHD_FILE: MSMg01no343_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:25 2005
         (410 letters)



>mm_chr2_38872863_38873672
          Length = 810

 Score =  793 bits (410), Expect = 0.0
 Identities = 410/410 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcaaagctggagaaactactgctttagagagcaggtaccacagaaggcaagaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcaaagctggagaaactactgctttagagagcaggtaccacagaaggcaagaaaaat 260

                                                                       
Query: 61  tacaaaggggcatatgtcctggcactagaaagacttgaagctctgattttcatctttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaaaggggcatatgtcctggcactagaaagacttgaagctctgattttcatctttaaa 320

                                                                       
Query: 121 tggattttataatacagaagacatgtttagaatagcgaagaacttttgctataaaaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggattttataatacagaagacatgtttagaatagcgaagaacttttgctataaaaatag 380

                                                                       
Query: 181 ttttaaaatggtttaccagcaacccatccaagacgagtacattcattaagaaggcaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaaaatggtttaccagcaacccatccaagacgagtacattcattaagaaggcaattg 440

                                                                       
Query: 241 agtgtatttggtgctatacggagagatcattccgtctgcttgctagttttctcaggactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtatttggtgctatacggagagatcattccgtctgcttgctagttttctcaggactg 500

                                                                       
Query: 301 gaaagttgcatactcatcagtccacactggccccgtaacctatgagatggacacatctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaagttgcatactcatcagtccacactggccccgtaacctatgagatggacacatctca 560

                                                             
Query: 361 agttctaggtggctggggaaacaaagtgtaatgatactttcttgagaggc 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttctaggtggctggggaaacaaagtgtaatgatactttcttgagaggc 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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