BAC Information

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BAC

Clone NameMSMg01-343N24
Chromosome2 (Build37)
Map Location 86,881,788 - 86,882,153
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105
Downstream geneOlfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343N24.T7 (MSMg01no343_n24.b1)MSMg01-343N24.TJ (MSMg01no343_n24.g1)
ACCAG457076AG457077
length768776
length of high quality
(start - end)		374 (37 - 410)400 (67 - 466)
definitionCHROMAT_FILE: MSMg01no343_n24.b1 PHD_FILE: MSMg01no343_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:52 2005CHROMAT_FILE: MSMg01no343_n24.g1 PHD_FILE: MSMg01no343_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAA
TTGTATTACCTGAAGGGTAATATGCATAATAAAGTCACTTATATAAGTCA
TTAGAAAACTGACAAAAATGAAAAAATTAGACAACAGCATGTAAAAATTA
CAGTAAATTTAGAATAATAAATTCAATATCTACAATTATTAAAACATAAG
CTGCATAATGTTATCAGTTTTGCTAAAATAATTATTGTTTCCAAGGAATA
GGTTATGCAGTATTTTCCTTGGAAAAGTGTTTATTTACTAGATGATTGCA
ATATTCTAGGTATTCATGGGTCAGTCTTATTTCAGATTTATTGTTACTTT
TCCATCAGTTGTTGTTTCATAATACATACATACATACATACATATAAACA
TATTTCCAAATAGCCCCCGCTGAGCTATATAATTTTATTTGTATCTATAT
TTTCAGGAATGACTACTTGGCACTGGAAAACTCATCGATGTGCTCTTCTC
AGGATGAAGACACTCTCTCCCTCCCCCGGTTTTTCTCGGGTAACAAACCT
TTGTCTCAAGTATAGCGTCTCTTGGTTTTTCCCCCCCCTTTTTACTCGTC
AATAAAAATGACGCCTGTCTCTTCCCGGGTGTACCTCCCTCTTTGTGCGA
TTCTCTTGGTCACTGGCACACCCCTCTACTTATTCCCCTTCCCCCTCCCC
CTAGAATTCCTCCTTTTTCCTCCCTACTCCCTTCTCTCTCCACCCCTTCC
TTTATTTCCTCTTTTCCC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTATAATTATGAAAGGAAAAATCCACCAAGATG
ACCTTTCAATTTTCAACATCTATGCCCTTCAAATGTGATGGCTCACATTT
TTATAAACAAAATATCACTAAACCATAAATCACCCATAGAAATGCACACA
TTAATAGAGAGTGACTTCAACACCCCACTTACACACAAGGAACAGTTCAT
CAACACAGAAACTAAACAGAATATAACGAAAATAAAAGATGCTATGAACC
AAATGTACCTAACAGATATCTACAGAACCATTCACTCAAACACATTAGAA
TATATGGTCTTCTCAGCATGTCAGGGAACCTTCCTTATCCAGAAAGCAAT
CCTCAACAGACACAAGAAAATTGAAGAANACCAGTGTAACTTATCACCCT
GGATTGATACTGGACTTCNNCANCNGAAAACAGAAAAAGACTATAATCTC
CTGAAAACTAACAAGCTCTATACTTAAGGACCCCTGGGGTCAAGAAGAAA
AAAGAAATAGAGACTTTTCTAGAGGCCCTGAAAATGAAAAACCCCCCTAC
TTAACTTTTTGGAACCCCCTGAAACCAATGGTTAAAGAGAAATTCCCCAA
ACAAATTACCTCCTAAAAAAAAGGGGGGGACCCGAGAGCTTTAATAAAAA
AAAAAAATTGTGTAAATTTTGTTCTCCCCAATTCCCACTGTAAAAAAAGA
GGGATCCGCGTGCGTTTCCCTTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_n24.b1 MSMg01no343_n24.b1 CHROMAT_FILE:
MSMg01no343_n24.b1 PHD_FILE: MSMg01no343_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:52 2005
         (374 letters)



>mm_chr2_86881585_86882358
          Length = 774

 Score =  629 bits (325), Expect = 0.0
 Identities = 358/371 (96%), Gaps = 5/371 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaaattgtattacctgaagggtaatatgcataataaagtcacttatataagtc 63
           ||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaaattgtattaaatgaagggtaatatgcataataaagtcacttatataagtc 263

                                                                       
Query: 64  attagaaaactgacaaaaatgaaaaaattagacaacagcatgtaaaaattacagtaaatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attagaaaactgacaaaaatgaaaaaattagacaacagcatgtaaaaattacagtaaatt 323

                                                                       
Query: 124 tagaataataaattcaatatctacaattattaaaacataagctgcataatgttatcagtt 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 tagaataataaattcaatatctacaattattaaaacataagcttcataatgttatcagtt 383

                                                                       
Query: 184 ttgctaaaataattattgtttccaaggaataggttatgcagtattttccttggaaaagtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgctaaaataattattgtttccaaggaataggttatgcagtattttccttggaaaagtg 443

                                                                       
Query: 244 tttatttactagatgattgcaatattctaggtattcatgggtcagtcttatttcagattt 303
           |||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 444 tttattgactagatgattgcaatattttgggtattcatggatcagtcttatttcagattt 503

                                                                       
Query: 304 attgttacttttccatcagttgttgtttcataatacatacatacatacatacatataaac 363
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    |
Sbjct: 504 attgttacttttccatcagttgttgtttcataa-acatacatacatacatacata----c 558

                      
Query: 364 atatttccaaa 374
           |||||||||||
Sbjct: 559 atatttccaaa 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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