BAC Information

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BAC

Clone NameMSMg01-344C03
Chromosome2 (Build37)
Map Location 68,208,717 - 68,209,172
singlet/doubletsinglet
Overlap geneStk39
Upstream geneCmya3, LOC621171, LOC227995, B3galt1
Downstream geneLOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344C03.T7 (MSMg01no344_c03.b1)MSMg01-344C03.TJ (MSMg01no344_c03.g1)
ACCAG457271AG457272
length741732
length of high quality
(start - end)
524 (46 - 569)456 (70 - 525)
definitionCHROMAT_FILE: MSMg01no344_c03.b1 PHD_FILE: MSMg01no344_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:13 2005CHROMAT_FILE: MSMg01no344_c03.g1 PHD_FILE: MSMg01no344_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTTGACAATACCGAATGGCAGAGAAGCACCTGAAAAAATGC
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAG
AAAACTGGATATAGTACTATTTTATGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
GAACTCACACAATATGTACTCACTGACAAGTGTATATTAGCCCAAAACCT
AAGATACCCTTTATATAAGATACTATTTCCTACACAATTGAAACTCTAAA
AAAATGAAAACTGAAATTGTGAACATTAGCCCCCTCCTTAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTTGAATTTCATGTGGGAAATAGAAGTT
AAATTAAAATTTATATTTTTAAAAGCCTTAGAATAGTCAGTCATGGGTAA
CAGGTACTTACAAATGACAGTTCACTTGATTCCTCTGTGAGCCACTGTGG
TATAGTCATCCAAAGAATTTCAGAGTAGGCTCTGTATATGTAAATTAAAT
TGTATGGCATTTTTTCGAAATATAACTTACATTCATTATTAACATGCAAG
TAGCAGTGTATCAAATATGCCATTTCCTAATTTTCAGCTCATTTGCTTGT
AACTGATGTCCTGCTGGGAGATGAATATGTTTAACTGTAACTAAAGCCAA
CATATTTGTACTTATGGGGCTAGTTACAGTCTTACTAAATTATGCTGCTG
TGCAACAGTGCTGGAGGTCTAAAGCAAACCCCCATATGCCCTTGGTGTGG
GTTTGTACTTGAGGGAGTTCTTTGTAAGTCCTGGCAGTGAACAAACGGAA
GCAGCATAAGAGAATCCGGGCAGAGCACGGTTGCCGTGATCATAGTGCAG
AGCATCCTGCGATCGGTGTTGGCTGGCACCCTTTGTTGGCAGACAGAGTC
TTACTATGTAGCCCTGGCTGGCCTGTGCGTCCAACGGTTGGGGTTAAAGG
TATGTAATTGCTACACTCACGACCTTTTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_c03.g1 MSMg01no344_c03.g1 CHROMAT_FILE:
MSMg01no344_c03.g1 PHD_FILE: MSMg01no344_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:13 2005
         (456 letters)



>mm_chr2_68208462_68209317
          Length = 856

 Score =  859 bits (444), Expect = 0.0
 Identities = 453/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgttgaatttcatgtgggaaatagaagttaaattaaaatttatatttttaaaagcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tctgttgaatttcatgtgggaaatagaagttaaattaaaatttatatttttaaaagcctt 652

                                                                       
Query: 61  agaatagtcagtcatgggtaacaggtacttacaaatgacagttcacttgattcctctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agaatagtcagtcatgggtaacaggtacttacaaatgacagttcacttgattcctctgtg 592

                                                                       
Query: 121 agccactgtggtatagtcatccaaagaatttcagagtaggctctgtatatgtaaattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agccactgtggtatagtcatccaaagaatttcagagtaggctctgtatatgtaaattaaa 532

                                                                       
Query: 181 ttgtatggcattttttcgaaatataacttacattcattattaacatgcaagtagcagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttgtatggcattttttcgaaatataacttacattcattattaacatgcaagtagcagtgt 472

                                                                       
Query: 241 atcaaatatgccatttcctaattttcagctcatttgcttgtaactgatgtcctgctggga 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 471 atcaaatatgccatttcctaattttcagttcatttgcttgtaactgatgtcctgctggga 412

                                                                       
Query: 301 gatgaatatgtttaactgtaactaaagccaacatatttgtacttatggggctagttacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gatgaatatgtttaactgtaactaaagccaacatatttgtacttatggggctagttacag 352

                                                                       
Query: 361 tcttactaaattatgctgctgtgcaacagtgctggaggtctaaagcaaacccccatatgc 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 351 tcttactaaattatgctgctgtgcaacagtgccggaggtctaaagcaaacccccatatgc 292

                                               
Query: 421 ccttggtgtgggtttgtacttgagggagttctttgt 456
           ||||||||||||||||||||||||| ||||||||||
Sbjct: 291 ccttggtgtgggtttgtacttgaggtagttctttgt 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)