Query= MSMg01no344_c07.b1 MSMg01no344_c07.b1 CHROMAT_FILE:
MSMg01no344_c07.b1 PHD_FILE: MSMg01no344_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:14 2005
(448 letters)
>mm_chr2_18787760_18788607
Length = 848
Score = 706 bits (365), Expect = 0.0
Identities = 419/447 (93%), Gaps = 18/447 (4%)
Strand = Plus / Minus
Query: 4 aaagtaagactcgacttgtctatgtgctccatagcttttctttatgaattaaaatcccct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaagtaagactcgacttgtctatgtgctccatagcttttctttatgaattaaaatcccct 789
Query: 64 gcaaaaaggaaagtttctctgctt--gagcactgcctcctggggatttcagaagtgactt 121
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 788 gcaaaaaggaaagtttctctgcttgagagcactgcctcctggggatttcagaagtgactt 729
Query: 122 cctgcctcccatcaggcatttggccagcacatctctgaggatgcttttgaaaacctgtgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cctgcctcccatcaggcatttggccagcacatctctgaggatgcttttgaaaacctgtgc 669
Query: 182 catagactaggtgctgcggagatcaaggactgtggtttttttccactttgtaccccagtg 241
|||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 668 catagactaggtgctgtggagatcaaggactgt-gttttatcccactttgtaccccagtg 610
Query: 242 ctcagcataggttttataacaaaagaggtgtaaggaagcctgtggctttgaaggaatctc 301
||| ||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 609 ctcggcatagggcctagaacaaaagaggtgtaaggaagcctgtagctttgaaggaatctc 550
Query: 302 caaaaggagtcagtgctcacagaggatgagctcagagctcagtggagctgtccttcagta 361
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 549 caaaaggagtcagtgctcacaggggatgagctcagagctcagtggagctgtccttcagta 490
Query: 362 acacactggggagagtacagcgagtgtgtggtacagacaaggctgtcagaggcaggatgg 421
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 489 acacactggggagagtacagcgagtgtgtgg---------------cagaggcaggatgg 445
Query: 422 tccacatctggaggttggatatgggga 448
|||||||||||||||||||||||||||
Sbjct: 444 tccacatctggaggttggatatgggga 418
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_c07.g1 MSMg01no344_c07.g1 CHROMAT_FILE:
MSMg01no344_c07.g1 PHD_FILE: MSMg01no344_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:14 2005
(398 letters)
>mm_chr2_18618981_18619778
Length = 798
Score = 741 bits (383), Expect = 0.0
Identities = 395/399 (98%), Gaps = 1/399 (0%)
Strand = Plus / Plus
Query: 1 tcctaacaagtttaaagtagaaaataaatagaacatagaaaataaagagcaaagcactta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tcctaacaagtttaaagtagaaaataaatagaacatagaaaataaagagcaaagcactta 259
Query: 61 ctaaaaatggagggtgtagcaatttaggagtttgaattgtctaaagactgaaactaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctaaaaatggagggtgtagcaatttaggagtttgaattgtctaaagactgaaactaagca 319
Query: 121 ccaggacctttaagttgtgaggggttttttgttttgtttttgtttttgtttttgtttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccaggacctttaagttgtgaggggttttttgttttgtttttgtttttgtttttgtttttt 379
Query: 181 t-agtcttcaaaatgctacagggaactgaaaataaattaagtacactccattaccaattt 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 380 taagtcttcaaaatgctacagggaactgaaaataaattaagtacactccattagcaattt 439
Query: 240 taataattcactccgggtttccctctatatctgtacctgggagtcctgttggggagaatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taataattcactccgggtttccctctatatctgtacctgggagtcctgttggggagaatg 499
Query: 300 tagaagaccactgtgaaacttacagagctaagtaaaaggatgtgtctctgactgctgacc 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 tagaagaccactgtgaaacttacagagttaagtaaaaggatgtgtctctgactgctgacc 559
Query: 360 tgcagaagccaaaggctgtcccggggtgtgaagaggact 398
|||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 tgcagaagccaaaggctgtcccagggtgtgaagaggact 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
