Query= MSMg01no344_g17.b1 MSMg01no344_g17.b1 CHROMAT_FILE:
MSMg01no344_g17.b1 PHD_FILE: MSMg01no344_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:35 2005
(517 letters)
>mm_chr2_138652171_138653087
Length = 917
Score = 942 bits (487), Expect = 0.0
Identities = 502/507 (99%), Gaps = 1/507 (0%)
Strand = Plus / Plus
Query: 5 gaattcagctttattgctgtagctctgaatttgacattttagtgtagatcagattttctg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagctttaatgctgtagctctgaatttgacattttagtgtagatcagattttctg 264
Query: 65 aggaggaaaatgtaggttcttctcatggatacctaagcagttctctgtgatgaggatggt 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggaggaaaatgtaggttcttttcatggatacctaagcagttctctgtgatgaggatggt 324
Query: 125 ctccatccctgaaatgggaatgctgtcatccctcaaacccatgagctgtcaggtctggac 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccatccctgaaatgggaatgttgtcatccctcaaacccatgagctgtcaggtctggac 384
Query: 185 cccagtgtcgctgtgacacctaaaccctctatctcagctgatgagtcataccagtgcaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccagtgtcgctgtgacacctaaaccctctatctcagctgatgagtcataccagtgcaga 444
Query: 245 gttgtcaaactaatacaaatcagcctccgggctcttaaagacttactcagcagaatatga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttgtcaaactaatacaaatcagcctccgggctcttaaagacttactcagcagaatatga 504
Query: 305 gggcagaccacagctgagtacaggccttaggcataaccattaagtaagagaatctacttc 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggacagaccacagctgagtacaggccttaggcataaccattaagtaagagaatctacttc 564
Query: 365 tacaaaaacccatttctgcttttctaggacttagactcttcagcctctttctgtttcaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacaaaaacccatttctgcttttctaggacttagactcttcagcctctttctgtttcaag 624
Query: 425 ctttctttttttattttttttccattttttattaggtatttagctcatttacatttccaa 484
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctttctttttt-attttttttccattttttattaggtatttagctcatttacatttccaa 683
Query: 485 tgctataccaaaagtcccccataccca 511
|||||||||||||||||||||||||||
Sbjct: 684 tgctataccaaaagtcccccataccca 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_g17.g1 MSMg01no344_g17.g1 CHROMAT_FILE:
MSMg01no344_g17.g1 PHD_FILE: MSMg01no344_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:36 2005
(512 letters)
>mm_chr2_138808106_138809018
Length = 913
Score = 953 bits (493), Expect = 0.0
Identities = 505/509 (99%), Gaps = 1/509 (0%)
Strand = Plus / Minus
Query: 1 actggtagatgactgtggccaaagtcagaatcctctaatgtggtagtaatggtctataag 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 709 actggtagatgactgtggccaaagtcagaatcctctaatgtcgtagtaatggtctataag 650
Query: 61 tcatttgcattttactatgatgataaaacacagaaactattacaaaacagttatagctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tcatttgcattttactatgatgataaaacacagaaactattacaaaacagttatagctgc 590
Query: 121 agtaattggttaagtgatacacaatataaacagagtgaagtgtcacttggaaatgtaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agtaattggttaagtgatacacaatataaacagagtgaagtgtcacttggaaatgtaaaa 530
Query: 181 tgtgcagggaatggagcatctgagtagcattgtttgtttag-ttttttttcttgcaatca 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 529 tgtgcagggaatggagcatctgagtagcattgtttgtttagtttttttttcttgcaatca 470
Query: 240 aagttaagatgttatcagcataaaatagtctattatagatataaggtgttttatatggcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagttaagatgttatcagcataaaatagtctattatagatataaggtgttttatatggcc 410
Query: 300 ttcgtcctaaccaaaactaaaaggaaaataactgatgtagatgtacaaaactttgcatgg 359
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 409 ttcgtcctaactaaaactaaaaggaaaataactgatgtagatgcacaaaactttgcatgg 350
Query: 360 agggaataaaagtgtaatgctggaactcatgcctttagcacaaaggaggatgtgcaaagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agggaataaaagtgtaatgctggaactcatgcctttagcacaaaggaggatgtgcaaagc 290
Query: 420 agggacaaaggaagctgcagaataacagggacaaacccaaaatatttatagtaattatat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agggacaaaggaagctgcagaataacagggacaaacccaaaatatttatagtaattatat 230
Query: 480 gctgattaggaattactttacatgtaaat 508
|||||||||||||||||||||||||||||
Sbjct: 229 gctgattaggaattactttacatgtaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space: 453306
Effective search space used: 453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
