Query= MSMg01no344_j03.b1 MSMg01no344_j03.b1 CHROMAT_FILE:
MSMg01no344_j03.b1 PHD_FILE: MSMg01no344_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:48 2005
(425 letters)
>mm_chr2_59822107_59822934
Length = 828
Score = 764 bits (395), Expect = 0.0
Identities = 415/423 (98%), Gaps = 3/423 (0%)
Strand = Plus / Minus
Query: 5 gaattctttaaatatcctagaatactgggtttaatactctgttttcatggtaagagggca 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaattctttaaagaacctagaatactgggtttaatactctgttttcatggtaagagggca 568
Query: 65 aagtgtcctgattatttcctgtgagtaaaggaaagagtgtttttcttgttctgcagctga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aagtgtcctgattatttcctgtgagtaaaggaaagagtgtttttcttgttctgcagctga 508
Query: 125 ctacaaatggatttgtgactttatttagaaaggccttagtaagtgtattaattgtgctgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctacaaatggatttgtgactttatttagaaaggccttagtaagtgtattaattgtgctgt 448
Query: 185 ctttggcactatttgactacactggtacacgctgccttgggaatcaggatgctctactac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctttggcactatttgactacactggtacacgctgccttgggaatcaggatgctctactac 388
Query: 245 gcaaactcagacagagaacagaactctaactttgaacgtgaaagtgacatctctatgcct 304
||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 387 gcaaagtcagacagagaacagaactctgactttgaacgtgaaagtgacatctctgtgcct 328
Query: 305 gtctgatcatttgaatgattacttggtaacggagttgggtccgtttcgtaggttttcatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtctgatcatttgaatgattacttggtaacggagttgggtccgtttcgtaggttttcatt 268
Query: 365 gttagatttctttttttttt---ctcaagaacaaaagagtgtaatgttacactgatgtac 421
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 267 gttagatttcttttttttttttcctcaagaacaaaagagtgtaatgttacactgatgtac 208
Query: 422 ctg 424
|||
Sbjct: 207 ctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 828
Length adjustment: 9
Effective length of query: 416
Effective length of database: 819
Effective search space: 340704
Effective search space used: 340704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_j03.g1 MSMg01no344_j03.g1 CHROMAT_FILE:
MSMg01no344_j03.g1 PHD_FILE: MSMg01no344_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:48 2005
(525 letters)
>mm_chr2_59667005_59667929
Length = 925
Score = 890 bits (460), Expect = 0.0
Identities = 507/534 (94%), Gaps = 19/534 (3%)
Strand = Plus / Plus
Query: 1 ctgtatagaacctgatctggtttgaggctgagcagagtggacctgcgctgacaggttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ctgtatagaacctgatctggtttgaggctgagcagagtggacctgcgctgacaggttctt 251
Query: 61 aat---------cccccccacagcagatctgcactaacaagcacacagcaaatcaaatct 111
||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 252 aatcgccccccccccccccacagcaggtctgcactaacaagcacacagcaaatcaaatct 311
Query: 112 ggctgtggagaaagaagaaggtgggaatctgaccccgtcgccaggcctggcagggcgggc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggctgtggagaaagaagaaggtgggaatctgaccccgtcgccaggcctggcagggcgggc 371
Query: 172 acgcttgtcagcttgtcagctgctccaacgtccggcttctctgccggctggtgaaacaca 231
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 372 acgcttgtcagcttgtcagctgctccaacgtccggcttctctgctggctggtgaaacaca 431
Query: 232 cgaatcctatttttagcgcagggctgtctgatgtgttactgtcaagacttcagcagcagc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cgaatcctatttttagcgcagggctgtctgatgtgttactgtcaagacttcagcagcagc 491
Query: 292 tgcagcagagattcccgattccgacttagaggcaccccgtttctcagcggtgaagcccct 351
||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 492 tgcagcagagattccagattccgacttaaaggcaccccgtttctcagtggtgaagcccct 551
Query: 352 tcactaaatgagaggggggagtgttgagtaggtggaccatccagtctcaactgcaagacc 411
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 552 tcactaaatgagaggggggagtgttgagtaggtggaccatccagtctcaaatgcaagacc 611
Query: 412 ggactcgtctctttccggggactcctaggtctcggtgtgcagacacatgtgtgtgctcct 471
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggacttgtctctttccggggactcctaggtctcggtgtgcagacacatgtgtg------- 664
Query: 472 gtgcacccctgatttctttctcctcctgcttggctccagccatggaaagaggag 525
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 665 ---cacccctgatttctttctcctcctgcttgggtccagccatggaaagaggag 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
