Query= MSMg01no344_k05.b1 MSMg01no344_k05.b1 CHROMAT_FILE:
MSMg01no344_k05.b1 PHD_FILE: MSMg01no344_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:53 2005
(399 letters)
>mm_chr2_172453921_172454718
Length = 798
Score = 569 bits (294), Expect = e-166
Identities = 303/306 (99%), Gaps = 1/306 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgctgtccacgattctcctagagagccgggtgattccagtcagctttggtctc 64
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgctgccca-gattctcctagagagccgggtgattccagtcagctttggtctc 263
Query: 65 ctgccttctcagttttctagactggagaggagcagagggaacctagagcagcattccagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgccttctcagttttctagactggagaggagcagagggaacctagagcagcattccagg 323
Query: 125 attgaggagaggccagaccccatctcttcctcatgctgttgagagagtaagagcaggaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attgaggagaggccagaccccatctcttcctcatgctgttgagagagtaagagcaggaaa 383
Query: 185 gaccccagaagagtgccctgacaagcatgggggtggggcattggggagagggaccagatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaccccagaagagtgccctgacaagcatgggggtggggcattggggagagggaccagatg 443
Query: 245 agccgctttgggtggccatcagagagtgcctgtcctagaggtgacatttatgctgacccc 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 agccgctttgggtggccatcagagagtgcctgtccaagaggtgacatttatgctgacccc 503
Query: 305 tgagtg 310
||||||
Sbjct: 504 tgagtg 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 798
Length adjustment: 9
Effective length of query: 390
Effective length of database: 789
Effective search space: 307710
Effective search space used: 307710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_k05.g1 MSMg01no344_k05.g1 CHROMAT_FILE:
MSMg01no344_k05.g1 PHD_FILE: MSMg01no344_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:53 2005
(443 letters)
>mm_chr2_172604291_172605133
Length = 843
Score = 795 bits (411), Expect = 0.0
Identities = 437/451 (96%), Gaps = 10/451 (2%)
Strand = Plus / Minus
Query: 1 tcactcactttcacaaaaaccgagagtcctagggagtgcttcctgtcctcgctaagaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcactcactttcacaaaaaccgagagtcctagggagtgcttcctgtcctcgctaagaaaa 539
Query: 61 gtctctgcgctcccctcccccagctgcctctgccattgactgtaatggtttctgacgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtctctgcgctcccctcccccagctgcctctgccattgactgtaatggtttctgacgggt 479
Query: 121 atttgtataatttgagttttgtggcttcgcaaggatctctctcccagggaaggtgatgtg 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 478 atttgtataatttgagttttgtggcttcacaaggatctctctcccagggaaggtgatgtg 419
Query: 181 aagctgttttgacaggtatccgcaaaggagagcatttaatatctaacagttcataaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aagctgttttgacaggtatccgcaaaggagagcatttaatatctaacagttcataaaaca 359
Query: 241 gagctggaagctgagcacccctttctctgaggtcaccaccacagcattgtaggtctaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gagctggaagctgagcacccctttctctgaggtcaccaccacagcattgtaggtctaagg 299
Query: 301 aagcaagaaaatgaaggaaggggagacagggttttctctctgctgtgacatcttgggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aagcaagaaaatgaaggaaggggagacagggttttctctctgctgtgacatcttgggagg 239
Query: 361 atggatttaatgagtggcactagtatatcttgtgtgctcggg--------aaaaccctct 412
|||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 238 atggatttaatgagtggcactagtatatcttgtgtgctggggggggggggag--ccctct 181
Query: 413 ctgtgctgttcaggtatttacaaacgtctag 443
|||||||||||||||||||| ||||||||||
Sbjct: 180 ctgtgctgttcaggtatttagaaacgtctag 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
