BAC Information

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BAC

Clone NameMSMg01-344L17
Chromosome2 (Build37)
Map Location 73,645,709 - 73,646,224
singlet/doubletsinglet
Overlap genenone
Upstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
Downstream geneAtf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344L17.T7 (MSMg01no344_l17.b1)MSMg01-344L17.TJ (MSMg01no344_l17.g1)
ACCAG457725AG457726
length764762
length of high quality
(start - end)		484 (32 - 515)515 (72 - 586)
definitionCHROMAT_FILE: MSMg01no344_l17.b1 PHD_FILE: MSMg01no344_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:00 2005CHROMAT_FILE: MSMg01no344_l17.g1 PHD_FILE: MSMg01no344_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCCAACC
CTTTCTACCTCCATTTCCCAAATTCTGGAATTAATAGGCAAGTGCTATCT
GGTTTAAGAACAACCTTTAGTGAGGCATGGTAGCACACGCCTTCTATCCC
AGCACTAGGGAGGCAGATCTCTGAGTTTGAGGCCAGCCTGGTCGATAAAG
TGAGTTCCAGGGCAGCCAGAGCCACACAGAGAATTCCTGTCTTGAAAAAA
CAAACAAACAAACAAACAAACAGCCTTTAATGCTCTACAGCACAGTAGAG
CAATTATAGCTGTATACTTTAAAATAGCTAGTAGATAGAATTTTGAATGT
TATCAACACAAGGAAACAATAAATATTTGAGTGAGGCTGCTGTTATTATC
TTGGCCTGGCTACTACACTTGTGTCTAAATGTTACATTGTGTCCCTAAAG
AATATGCAATCATGTATCAATAAAAGAAACAGTCCTTCATCTGTATAGAT
CTTAGCACAATGCAAACAGGTAGTATTTGGTGCACACAATTTTACAGACA
CTGACCTGTGCTAACAATTTTTAAGAAATGGTTGTATTTTAAAATGAAGC
TTATTAAAAAGTACCACTTATTCTCCTTTATTGAAAAGGTCTAAAGCGGC
CCTGCTTTTTGAGGAATAAAAAGGGAAGAGGGAAATGGGTGGAAAAAGTG
CCGTCTTGGGTCCTCATAACCCTGGTTTATAACCCCCTCCCCCCCTTGTT
TAGACCTCTCTACT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAAGGGACGCAGGTTGGACTGTCACAG
GGGCTCCGCTCAGAGATGGTGGGCACTGTGGAGCTAGGGAATTGAACAAC
ATAAGAGGGCAGAATGGGAACCTCGTTTGGTAGAGAAGTAAACCAGGAGT
CAATAAAGATGGCTGTAGTCTGGGTGTTATGATGCAGGGACCCAGCTCTG
TGCCACCCATGTTCCAGTTATGCCTCAACCTCACAAACTGCTGAGTGTGC
TCAGAAGTCACGGGGCAAAGGAGAAGGTATGGAGACTCCCTTTGCGGCGG
CCTGTGGGCTATCCAAGAAGATCCAGGCTCAGGAGCAGCAGATGGCAGCA
GAGTCAAGTGGTGGAAGGAGTGGGAAGATTTTTAAAAAAAAACAAAAAAA
CGTTTTTTTGGGAGCCGAAGTGATGACTCAGCAGCTAAGAGCCCTTGCTC
GCGCAGAGGACCCAGGTTCAATTCCCAGCACCCACATGACAGCTTACTGT
TACACTGTGTCTGTTGGCATGAGGAAGGGGAGAGAAAACAGTAGTGGGCT
TGTGAAACAGCAAAATCTTTTATTATCGCCACCGCATAAACCAAGTTTGT
TGATCTTCAGGGCTACCACGAGGAGGACTAGGGAGCCTCGTTTTCTCCTG
GTTGTCCCAAAGAGGGGTTGTGAATAGGGTCTATTAGTTTTAAACCCCTT
ATGATTCTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_l17.g1 MSMg01no344_l17.g1 CHROMAT_FILE:
MSMg01no344_l17.g1 PHD_FILE: MSMg01no344_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:00 2005
         (515 letters)



>mm_chr2_73645635_73646550
          Length = 916

 Score =  967 bits (500), Expect = 0.0
 Identities = 512/516 (99%), Gaps = 1/516 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaagggacgcaggttggactgtcacaggggctccgctcagagatggtgggcactgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 590 cagaagggacgcaggttggactgtcacaggggctccgctcagagatggtgggcactgggg 531

                                                                       
Query: 61  agctagggaattgaacaacataagagggcagaatgggaacctcgtttggtagagaagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agctagggaattgaacaacataagagggcagaatgggaacctcgtttggtagagaagtaa 471

                                                                       
Query: 121 accaggagtcaataaagatggctgtagtctgggtgttatgatgcagggacccagctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 accaggagtcaataaagatggctgtagtctgggtgttatgatgcagggacccagctctgt 411

                                                                       
Query: 181 gccacccatgttccagttatgcctcaacctcacaaactgctgagtgtgctcagaagtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gccacccatgttccagttatgcctcaacctcacaaactgctgagtgtgctcagaagtcac 351

                                                                       
Query: 241 ggggcaaaggagaaggtatggagactccctttgcggcggcctgtgggctatccaagaaga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 350 ggggcaaaggagaaggtatggagactccctttgcggcggcctgtgggctagccaagaaga 291

                                                                       
Query: 301 tccaggctcaggagcagcagatggcagcagagtcaagtggtggaaggagtgggaagattt 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tccaggcccaggagcagcagatggcagcagagtcaagtggtggaaggagtgggaagattt 231

                                                                       
Query: 361 ttaaaaaaaaac-aaaaaaacgtttttttgggagccgaagtgatgactcagcagctaaga 419
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ttaaaaaaaaaccaaaaaaacgtttttttgggagccgaagtgatgactcagcagctaaga 171

                                                                       
Query: 420 gcccttgctcgcgcagaggacccaggttcaattcccagcacccacatgacagcttactgt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gcccttgctcgcgcagaggacccaggttcaattcccagcacccacatgacagcttactgt 111

                                               
Query: 480 tacactgtgtctgttggcatgaggaaggggagagaa 515
           ||||||||||||||||||||||||||||||||||||
Sbjct: 110 tacactgtgtctgttggcatgaggaaggggagagaa 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space:   457530
Effective search space used:   457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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