BAC Information

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BAC

Clone NameMSMg01-344O07
Chromosome2 (Build37)
Map Location 66,436,825 - 66,595,487
singlet/doubletdoublet
Overlap geneScn9a, Scn7a
Upstream geneScn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706
Downstream geneLOC383707, LOC100039540, Gm1322, Cmya3, LOC621171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344O07.T7 (MSMg01no344_o07.b1)MSMg01-344O07.TJ (MSMg01no344_o07.g1)
ACCAG457847AG457848
length727721
length of high quality
(start - end)
495 (72 - 566)188 (70 - 257)
definitionCHROMAT_FILE: MSMg01no344_o07.b1 PHD_FILE: MSMg01no344_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:13 2005CHROMAT_FILE: MSMg01no344_o07.g1 PHD_FILE: MSMg01no344_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,594,993 - 66,595,487)(66,436,825 - 66,437,012)
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATGCAAAGAGGATCCGC
GGAATTCAAAGATTACATGACAACTTATTGATAGAATGACTTTACACATG
GCCAAATTTTACATATTTACTATTTTACAGGTATAAAACCGAAAATGTTG
ACTTCCCCAGAGCCGAAGGGCCTTGTCCCATTTACAACAGAGTCACTTGA
ACTTATAGAAAATCACATTGCTAAAAAGTGCAATGAAGAGCCTGAAGAAG
AAGAAGGTTTAAAACCAAGTTGTAATCTAGAAGCTGGCAAAAGACTTCCA
ATTCCCTATGGAACCCTCCCTCTTTGAACCGTGTCAGAGCCCTTGGAAGA
TGTGGATCCATACTACTATGTTAAGAGAAATGTAAGTATTAACTGTTATC
ATTGAAGCTATATTTTACTTCGCTTATATTCAGCCACTTGAAATGTAATT
GAGATAAGACTTAAAGAAAATTAATAGAGAAGGCATTCTTTCATAATCTA
TTCTTTGTGGGGGTCAACATGCTCAAGATAGTTAAACCTGATAAAATATC
TGAGTAATATATTATGGTTAATGACCGTAGTATATATACTGCTATTCCTT
AATATAAGTGGCTATTGTGAAAATATGCTAATTACCATTTTCTGATTATC
AATTTTAAAACTATCATGACATATTTAGAATATGGACAGAATTTTCCAAT
ACCTTGATAACTTACTAAGTCTAATAN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCCTGAAGCCTTTCCTTCAGTTAGCACAT
TCTGACAATAACAGCTGCGCTCTTTAAGAACGGTTGGCTGTCTCCCCAGT
ATTTGTGTGCTTTGCATTTTTTAATTAAAATTAACTTTACTGTTATAAAT
AGTAGAAAAGAAAGAACTCAGTCATGTTTTTGTTCATTCTGTAATATCAC
ATCTGTAAGAATGGAGAACAAATGGAAATGAAGACAAACTGTTTTTAAAT
AATATGAAGGGAACAGAACAGACTTGCGGGATTTTTTCAACGTCAAACGA
TTTATTTTAAGAAAATACAATTTATAGTTGACTATACACAAGTTTTCACC
CTGATACTTGCATTTAAACATCAGCTTCCTAACACAAATGGAAGTGCATT
TACAGAACAGTGTTTTTACTGGACCTTCTGTGTCAGTCTTTTATTATTAC
TACTATCCTCTTATCTTATTTTTATCGGTTATTGTATCTATTCATTTTTC
AAATGTTGTTGCCCCTCTTCCCTTCCTGGTCTCCTCTCTGCAAACTATTC
CATCCCGCCTCCTCTCCCCTTTACCCCTAATAAGGTGCTCCCCCACCTAT
CTACCTAATCCCACCTCTACTCTCTACCATCCCCCTAATTTGTTTTATTA
AGCCTCTCCCGTATCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_o07.b1 MSMg01no344_o07.b1 CHROMAT_FILE:
MSMg01no344_o07.b1 PHD_FILE: MSMg01no344_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:13 2005
         (495 letters)



>mm_chr2_66594793_66595687
          Length = 895

 Score =  888 bits (459), Expect = 0.0
 Identities = 486/495 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttattgatagaatgactttacacatggccaaattttacatatttactattttacagg 60
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 695 aacttattgatagaatgactttacacatggccatattttacacatttactattttacagg 636

                                                                       
Query: 61  tataaaaccgaaaatgttgacttccccagagccgaagggccttgtcccatttacaacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tataaaaccgaaaatgttgacttccccagagccgaagggccttgtcccatttacaacaga 576

                                                                       
Query: 121 gtcacttgaacttatagaaaatcacattgctaaaaagtgcaatgaagagcctgaagaaga 180
           |||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct: 575 gtcacttgaacttatagaaaatcacattgctaaaaaatgcaatgaagaccccgaagaaga 516

                                                                       
Query: 181 agaaggtttaaaaccaagttgtaatctagaagctggcaaaagacttccaattccctatgg 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agaaggtttaaaaccaagtcgtaatctagaagctggcaaaagacttccaattccctatgg 456

                                                                       
Query: 241 aaccctccctctttgaaccgtgtcagagcccttggaagatgtggatccatactactatgt 300
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaccctccctcgaggaaccgtgtcagagcccttggaagatgtggatccatactactatgt 396

                                                                       
Query: 301 taagagaaatgtaagtattaactgttatcattgaagctatattttacttcgcttatattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taagagaaatgtaagtattaactgttatcattgaagctatattttacttcgcttatattc 336

                                                                       
Query: 361 agccacttgaaatgtaattgagataagacttaaagaaaattaatagagaaggcattcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agccacttgaaatgtaattgagataagacttaaagaaaattaatagagaaggcattcttt 276

                                                                       
Query: 421 cataatctattctttgtgggggtcaacatgctcaagatagttaaacctgataaaatatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cataatctattctttgtgggggtcaacatgctcaagatagttaaacctgataaaatatct 216

                          
Query: 481 gagtaatatattatg 495
           |||||||||||||||
Sbjct: 215 gagtaatatattatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no344_o07.g1 MSMg01no344_o07.g1 CHROMAT_FILE:
MSMg01no344_o07.g1 PHD_FILE: MSMg01no344_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:13 2005
         (188 letters)



>mm_chr2_66436625_66437212
          Length = 588

 Score =  364 bits (188), Expect = e-105
 Identities = 188/188 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcctgaagcctttccttcagttagcacattctgacaataacagctgcgctctttaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctgaagcctttccttcagttagcacattctgacaataacagctgcgctctttaaga 260

                                                                       
Query: 61  acggttggctgtctccccagtatttgtgtgctttgcattttttaattaaaattaacttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acggttggctgtctccccagtatttgtgtgctttgcattttttaattaaaattaacttta 320

                                                                       
Query: 121 ctgttataaatagtagaaaagaaagaactcagtcatgtttttgttcattctgtaatatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgttataaatagtagaaaagaaagaactcagtcatgtttttgttcattctgtaatatca 380

                   
Query: 181 catctgta 188
           ||||||||
Sbjct: 381 catctgta 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)