Query= MSMg01no345_b09.b1 MSMg01no345_b09.b1 CHROMAT_FILE:
MSMg01no345_b09.b1 PHD_FILE: MSMg01no345_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:28 2005
(539 letters)
>mm_chr2_80482010_80482950
Length = 941
Score = 961 bits (497), Expect = 0.0
Identities = 527/537 (98%), Gaps = 2/537 (0%)
Strand = Plus / Minus
Query: 5 gaattccaaaatgtgaaatagtcttgtattcacaatattaatc-ttcacctgtattttac 63
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 gaattccaaaatgtgaaatagtcttgtattcacaatattaatctttcacctgtattttac 566
Query: 64 gatgctagagatccaatccagggcatttgctcatgttatacaagctcccacaaggtacat 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatgctagagatccaatccagagcatttgctcatgttatacaagctcccacaaggtacat 506
Query: 124 -cacaaggttaatctttggcaggtgttcttagttatactatttcattgatttaaaagcat 182
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 ccacaaggctaatctttggcaggtgttcttagttatactatttcatggatttaaaagcat 446
Query: 183 cattttgaaaaccttagcttattatttaaaaagaaatctctaataaaagcagaataattt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattttgaaaaccttagcttattatttaaaaagaaatctctaataaaagcagaataattt 386
Query: 243 atttctacatctgtgtttctactatgcacctaaaaacaagaatacaccaatctttataca 302
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttctatatctgtgtttctactatgcacctaaaaacaagaatacaccaatctttataca 326
Query: 303 aatattggaaaatcagaaacaataaaaatgtaataatcatgcacaccttaccacactaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatattggaaaatcagaaacaataaaaatgtaataatcatgcacaccttaccacactaag 266
Query: 363 gacgctagaacttaccttctaattcagaaatacactgaaaggagttataaaacttatttt 422
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 265 gacgctagaacttaccttctaattcagaaatacagtaaaaggagttataaaacttatttt 206
Query: 423 cagccaggcgtggtggcgcacgcctttaatcccagcatctgggaggcagaggcaggtgga 482
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 cagccaggcatggtggcgcacgcctttaatcccagcacctgggaggcagaggcaggtgga 146
Query: 483 tttctgagttcgaggctagcctggtctaccgattgagttccaggacagccagggcta 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tttctgagttcgaggctagcctggtctaccgattgagttccaggacagccagggcta 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 941
Length adjustment: 10
Effective length of query: 529
Effective length of database: 931
Effective search space: 492499
Effective search space used: 492499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_b09.g1 MSMg01no345_b09.g1 CHROMAT_FILE:
MSMg01no345_b09.g1 PHD_FILE: MSMg01no345_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:28 2005
(371 letters)
>mm_chr2_80307648_80308418
Length = 771
Score = 437 bits (226), Expect = e-127
Identities = 244/250 (97%)
Strand = Plus / Plus
Query: 1 tcctgcctctatttacccagtgccagaattacagtcaagaaccaccatacccagcagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgcctctatttacccagtgccagaattacagtcaagaaccaccatacccagcagagg 260
Query: 61 gtttatttgtttgtttctgaaacaagaagaacaaaaaagagacccaataggtttttatat 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gtttatttgtttgtttctgaaacaagaagaacaaaaaggagacccaataggtttttatat 320
Query: 121 ggtactctgggttaatttctttctttcttcccttctttctttctttctttctttctttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtactctgggttaatttctttctttcttcccttctttctttctttctttctttctttct 380
Query: 181 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttct 240
|||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| |||
Sbjct: 381 ttctttctttctttctttctttctttttttctttctttctttctttccttcattccttcc 440
Query: 241 ttccttcctt 250
||||||||||
Sbjct: 441 ttccttcctt 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
