NTTTTTTGTCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAA
CAAACCAGTAGCCAAAATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCC
CACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTC
AACATAATACTTGAAGTATTAGCCAGAGCAATTCGACTACAAAAGGAGAT
CAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAG
ATGATATGATAGTATATATAAGTGACCCTAAAAATTCTGCCAGAGAACTC
CTAAACCTGATAAGCAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTC
AAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAG
AAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAGTATAAAATAT
CTTGGCATAACTCTAACTAAGGAGTTGAAAGATCTGTATGATAAAAACTT
CAAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATC
TCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTG
CCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCCACTCC
ATTCCTTCAGAAATTAAAAGGAGCAATTTTGCAAATCCTCTGTAATAAAA
AAAAACCTAGGAAA

NNNNNNGGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAATTTATACAGTGA
AAATCCAAATCTTTGTAGTTTCTAAGTTCTTTGAGAATAATTCACTTATC
ACTCCTTCTGAAAAAAAAAAACAAAACAAACAAAAAAACAAAAAAAACTC
TCTTTATAAGGAATTATAATATCTTTTATCAATGACATGGTAAGAGTTAG
TATTAAATGTCTTAAATGTGTTTTTTTATGAAGGAAAGAGGCTTAAGTAA
TAGTTTCAACTGAAACATCAATTGTGATGTTTTCTAGGGACAGTGTCAAA
TTACATGAAATATACACAAGAACATTTGATCAATATAAACAATATGAGAA
ATAATAGGAGGAAAACCATATCTAACATCTGGTAACTGATACATAGGAAA
ACATTGGCCATTGAGACTTTTGATTTGTATGCCCTTCATTACATCCTTGA
TATTGATCTGTTAACAAACATTTCAGCTAAAACAAATCGCAAATCATCCA
TATTAGTAAATCATTATGGGTAGAAATCTTGGAAGCTACATTATTGAATG
ATATAAGGCTTTAATCATATTTTTATCAGGTTATTATTGGATAAAAGTAG
ATGGTGAACTACTATTCCTTAAAAAGACAGGCAATGGCCTTTCCAAAGGT
TAATGGTATTAATCTTGACACTTAATATCCAGAAAGGGAGGATCCCCAAA
GATTTAAAAGGTTT

Query= MSMg01no345_d08.g1 MSMg01no345_d08.g1 CHROMAT_FILE:
MSMg01no345_d08.g1 PHD_FILE: MSMg01no345_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:37 2005
         (518 letters)



>mm_chr2_98422555_98423470
          Length = 916

 Score =  909 bits (470), Expect = 0.0
 Identities = 504/518 (97%), Gaps = 9/518 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaatttatacagtgaaaatccaaatctttgtagtttctaagttctttgagaataattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 823 actaatttatacagtgaaaatccaaatctttgtagtttctaagttctttgaaaataattc 764

                                                                       
Query: 61  acttatcactccttctgaaaaaaaaaaacaaaacaaacaaaaaaacaaaaaaaactctct 120
           ||||||| ||| |||||  |||||||||||||| |||| |||||||   |||| ||||||
Sbjct: 763 acttatcgctcgttctg--aaaaaaaaacaaaa-aaac-aaaaaac---aaaacctctct 711

                                                                       
Query: 121 ttataaggaattataatatcttttatcaatgacatggtaagagttagtattaaatgtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ttataaggaattataatatcttttatcaatgacatggtaagagttagtattaaatgtctt 651

                                                                       
Query: 181 aaatgtgtttttttatgaaggaaagaggcttaagtaatagtttcaactgaaacatcaatt 240
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aaatgtg--tttttatgaaggaaagaggcttaagtaatagtttcaactgaaacatcaatt 593

                                                                       
Query: 241 gtgatgttttctagggacagtgtcaaattacatgaaatatacacaagaacatttgatcaa 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 592 gtgatgttttctagggacagtgacaaattacatgaaatatacacaagaacatttgatcaa 533

                                                                       
Query: 301 tataaacaatatgagaaataataggaggaaaaccatatctaacatctggtaactgataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tataaacaatatgagaaataataggaggaaaaccatatctaacatctggtaactgataca 473

                                                                       
Query: 361 taggaaaacattggccattgagacttttgatttgtatgcccttcattacatccttgatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 taggaaaacattggccattgagacttttgatttgtatgcccttcattacatccttgatat 413

                                                                       
Query: 421 tgatctgttaacaaacatttcagctaaaacaaatcgcaaatcatccatattagtaaatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgatctgttaacaaacatttcagctaaaacaaatcgcaaatcatccatattagtaaatca 353

                                                 
Query: 481 ttatgggtagaaatcttggaagctacattattgaatga 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttatgggtagaaatcttggaagctacattattgaatga 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 916
Length adjustment: 10
Effective length of query: 508
Effective length of database: 906
Effective search space:   460248
Effective search space used:   460248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)