BAC Information

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BAC

Clone NameMSMg01-345F22
Chromosome2 (Build37)
Map Location 105,885,901 - 106,061,053
singlet/doubletdoublet
Overlap geneLOC668765, Dcdc5
Upstream geneLOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4
Downstream gene9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345F22.T7 (MSMg01no345_f22.b1)MSMg01-345F22.TJ (MSMg01no345_f22.g1)
ACCAG458209AG458210
length781777
length of high quality
(start - end)		462 (56 - 517)450 (84 - 533)
definitionCHROMAT_FILE: MSMg01no345_f22.b1 PHD_FILE: MSMg01no345_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:48 2005CHROMAT_FILE: MSMg01no345_f22.g1 PHD_FILE: MSMg01no345_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,060,595 - 106,061,053)(105,885,901 - 105,886,348)
sequence
NNNNNNNNNNTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTTANATCTCTCAGAACTTCCTGGATGTCAGAGCA
GCTTTGGTTCTAACGATGCGAGTCTCGCTGAGCTCCAGCCTGACAACTGG
TCACATGACAACTGGTCACATGACAACTGATCACTAGCTTTAAAAGACGA
GTTACGATGGAAGCTTAGAATTTTCTCTTCACTCCCAACTTCTGGGAAGG
GAAAGAAAATAATGAAAGTGATGTTACCAATCAATCATGGCTCCATATGA
AACTCCTCACTGCAGGCTCATGTGTCAGGAGGTGGATGGAGGTGGTTCCT
AGACCCAGGACTCTGCAGCCATTGTTCTATGTTCCTCAGGCCACCTGCTG
CCTTTGTTGTATCCTTAACAATAAATATGCCAGTGCTATAAAGAGCTCTC
ATTAAGTTCTGGAAGCCAATTTCACGATTACTGAAACTGTGCTCCTGACA
CTGAAGTCAGCAGCAAGGACTTGCCCTGTGGAGGGCAACTCTAGNTCAGT
GTGGAAACTGAACTGCGCANCTGACCACTGGCTGAAGCTGTGGACTACTG
GAAAACTGAACGAGTACAAGGATCCTCCCTTATCCGGAAAAAACCTATTC
CGTAAAGAAATCCTTCCCGGTTCCTTTTTGAGAAATTTAAAAGGGAAGAC
CCTAGGGGGGTTGCCCCCCCCACAAAGGGGGGGGAAGAAACGGTCCAAGT
TTTTTTCCAAAAAATCCCGGGAAGAGAGGAG

NNNNCCTTCCGAAGCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATAGCTAAGAGAATT
TTATTCTGTCCTCTGCAAAGAACTCTGAGAAACATTAATATTCATTAGGA
CAATAACTCATAAGGGTTGTAAATATTGTCTTTATTACCTCAAATTGTTG
CACGGTTGAATGCACACAGTGAGTTCAGCTCCACAAATACAGCTGAGAAA
GTTCATAAGAAAATTCTCCACCCCAAAATCCTATTGTTTCCTTGTAAGAA
AGCTGAAGGACCAGTGATAGAGAGGGGGAGACTTCTTCATTCTGTTACAA
ATTCAGCAGGTATTTTTCATGTCCCTCTTACAATGTCCCAGACATCAATC
CAAGGTTTGAAGTTGTAGTCAGAATAAGACGGTGGTCTCATGAAGCCTTG
GTTTTAATGAGATAGAGGAGACAAGTAAGTGCTACTAAGGAGATAAATTT
TTATTATTATAATAATAATTCATAATAATAGTGTCATAAAATATCAGAAA
AATGGATACTTTTTCTCAAGAACTGTTCAATCAAATTTGTCTGTGCCCCC
CTTTCTTACTTGCCATGAGAATTAATTTAAACATTTGGAAACTACTCCCC
CCCAAAGGGTTTGCCTTTTAAACTGTTTAATTTTTGAAGGATCCAAATTC
TTGGGAGAACGGGTGAACAACGAGTTGTTTATAATGAAAAACCCCTGCGG
TAAAAAATATTTTATGGTGACATTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_f22.b1 MSMg01no345_f22.b1 CHROMAT_FILE:
MSMg01no345_f22.b1 PHD_FILE: MSMg01no345_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:48 2005
         (462 letters)



>mm_chr2_106060392_106061253
          Length = 862

 Score =  851 bits (440), Expect = 0.0
 Identities = 454/459 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttanatctctcagaacttcctggatgtcagagcagctttggttctaacgatg 63
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ggaagtccttaaatctctcagaacttcctggatgtcagagcagctttggttctaacgatg 603

                                                                       
Query: 64  cgagtctcgctgagctccagcctgacaactggtcacatgacaactggtcacatgacaact 123
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 602 cgagtctcgctgagctccagcctgacaactggccacatgacaactggtcacatgacaact 543

                                                                       
Query: 124 gatcactagctttaaaagacgagttacgatggaagcttagaattttctcttcactcccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gatcactagctttaaaagacgagttacgatggaagcttagaattttctcttcactcccaa 483

                                                                       
Query: 184 cttctgggaagggaaagaaaataatgaaagtgatgttaccaatcaatcatggctccatat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cttctgggaagggaaagaaaataatgaaagtgatgttaccaatcaatcatggctccatat 423

                                                                       
Query: 244 gaaactcctcactgcaggctcatgtgtcaggaggtggatggaggtggttcctagacccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaaactcctcactgcaggctcatgtgtcaggaggtggatggaggtggttcctagacccag 363

                                                                       
Query: 304 gactctgcagccattgttctatgttcctcaggccacctgctgcctttgttgtatccttaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gactctgcagccattgttctatgttcctcaggccacctgctgcctttgttgtatccttaa 303

                                                                       
Query: 364 caataaatatgccagtgctataaagagctctcattaagttctggaagccaatttcacgat 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 caataaatacgccagtgctataaagagctctcattaagttctggaagccaatttcacgat 243

                                                  
Query: 424 tactgaaactgtgctcctgacactgaagtcagcagcaag 462
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aactgaaactgtgctcctgacactgaagtcagcagcaag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_f22.g1 MSMg01no345_f22.g1 CHROMAT_FILE:
MSMg01no345_f22.g1 PHD_FILE: MSMg01no345_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:48 2005
         (450 letters)



>mm_chr2_105885701_105886548
          Length = 848

 Score =  801 bits (414), Expect = 0.0
 Identities = 441/450 (98%), Gaps = 2/450 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatagctaagagaattttattctgtcctctgcaaagaactctgagaaacattaatattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatagctaagagaattttattctgtcctctgcaaagaactctgagaaacattaatattc 260

                                                                       
Query: 61  attaggacaataactcataagggttgtaaatattgtctttattacctcaaattgttgcac 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaggacaataactcataaaggttgtaaatattgtctttattacctcaaattgttgcac 320

                                                                       
Query: 121 ggttgaatgcacacagtgagttcagctccacaaatacagctgagaaagttcataagaaaa 180
           |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ggttgaatacacacagtgagttcagcttcacaaatacagctgagaaagttcataagaaaa 380

                                                                       
Query: 181 ttctccaccccaaaatcctattgtttccttgtaagaaagctgaaggaccagtgatagaga 240
           |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ttctccaccc-aaaatcctattgtttccttgtgagaaagctgaaggaccagtgatagaga 439

                                                                       
Query: 241 gggggagacttcttcattctgttacaaattcagcaggtatttttcatgtccctcttacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggggagacttcttcattctgttacaaattcagcaggtatttttcatgtccctcttacaa 499

                                                                       
Query: 301 tgtcccagacatcaatccaaggtttgaagttgtagtcagaataagacggtggtctcatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtcccagacatcaatccaaggtttgaagttgtagtcagaataagacggtggtctcatga 559

                                                                       
Query: 361 agccttggttttaatgagatagaggagacaagtaagtgctactaaggagataaattttta 420
           ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 agcct-ggttttagtgagatagaggagacaagtaagtgctattaaggagataaattttta 618

                                         
Query: 421 ttattataataataattcataataatagtg 450
           ||||| ||||||||||||||||||||||||
Sbjct: 619 ttattctaataataattcataataatagtg 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 848
Length adjustment: 10
Effective length of query: 440
Effective length of database: 838
Effective search space:   368720
Effective search space used:   368720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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