BAC Information

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BAC

Clone NameMSMg01-345L06
Chromosome2 (Build37)
Map Location 12,469,051 - 12,658,777
singlet/doubletdoublet
Overlap genenone
Upstream geneRbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
Downstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn, Trdmt1, Vim, St8sia6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345L06.T7 (MSMg01no345_l06.b1)MSMg01-345L06.TJ (MSMg01no345_l06.g1)
ACCAG458463AG458464
length759748
length of high quality
(start - end)		534 (53 - 586)559 (85 - 643)
definitionCHROMAT_FILE: MSMg01no345_l06.b1 PHD_FILE: MSMg01no345_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:13 2005CHROMAT_FILE: MSMg01no345_l06.g1 PHD_FILE: MSMg01no345_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,469,051 - 12,469,580)(12,658,588 - 12,658,777)
sequence
TTTTTACGTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATGGACGTTCATGTATGAAACATGGAAGAACACATTTA
ACCCTGTAGGCTCCCTTTGTATTTTCATTTCTTAGTTTAGTCTCATTTAA
TATCTATGACATCATAATATATAACCTCTTGCTCTGTCTCTGCTTTAGGG
TCTTTTCCTCCCAAGCCTTGCCTAGCTTTACATTGTTCATGAGCTGCAGC
TTTGTTCTTGTCCCCCCTTTGCTGAATAATTTCCAATGACTCTTACTTCT
TGTATTATAAAAGGTCAAGGTGCTTAATACACTCCAGTACAATTTCTGCA
CGATAGTCCTAATGTACTTACTGGTTCTCTCTCTCATTTCTCTTATTCTA
CAAATCTCCATTCCAGCAACCTGACTACATGCACCACTGTGCTCTCCTCC
TGTGAAACATATTTTCTATCCATCTAATAAAAACCTAGCCACATTTCAGG
GCTCAACTCAATTGCTACTTCTTCATGAACACTGCTTGGATTCTCCTGGG
GACAATGCAGTTTCCTCCCCTTATGCTTTGAAAGGACTCTGTGTTTACCA
TCTCAGACACTTGTTATATTTTACCTTCTGCTAAAGATATTTTGGTATTT
GCAAGTCAGAGATAAATTGAGAATGGATCTTATCCATTCTTTTTATTCTC
CAAGGTATCTTGTCAGTCTGTGTTCAAAAATTGTGGGTTAAATTGAAAGG
TTTTATCAC

NNNNNNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAATAATTTACTGAA
TCCTCAAACTCCATACTTTTCTATATATAAAGAAGGGATGGGCTTTCATT
AATAATCATTTATCTCAGTTTTAAAGAAACTGGTTAACAGGGGAAAACAC
TTTTAATAAATACTCTAGAACTTAGCAGCTGTTGGGTAAGGATCATCAGA
CCCTTTATTTTATTGACTGTGACTTCTTTTATATATATATATTTTATTAG
GTATTTTCCTCATTTATATTTCCAATGCTATCCCAAAAGTCCCCCATAAC
CTCCCCCCCACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTT
CCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTC
CAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAA
GAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTG
CAGATCTCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGAGGGT
CCTGTGATCCATCCAATAGCTGACTGAACTCACACAATATGTACTCACTG
ATAAGTGGACATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACA
TTTTGCTAATGCATGAAACTCAAGAAGATTGAAGACCAAAGTGTGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_l06.b1 MSMg01no345_l06.b1 CHROMAT_FILE:
MSMg01no345_l06.b1 PHD_FILE: MSMg01no345_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:13 2005
         (534 letters)



>mm_chr2_12468847_12469780
          Length = 934

 Score =  994 bits (514), Expect = 0.0
 Identities = 526/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatggacgttcatgtatgaaacatggaagaacacatttaaccctgtaggctccct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatggacgttcatgtatgaaacatggaagaacacatttaaccctgtaggctccct 264

                                                                       
Query: 65  ttgtattttcatttcttagtttagtctcatttaatatctatgacatcataatatataacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtattttcatttcttagtttagtctcatttaatatctatgacatcataatatataacc 324

                                                                       
Query: 125 tcttgctctgtctctgctttagggtcttttcctcccaagccttgcctagctttacattgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttgctctgtctctgctttagggtcttttcctcccaagccttgcctagctttacattgt 384

                                                                       
Query: 185 tcatgagctgcagctttgttcttgtcccccctttgctgaataatttccaatgactcttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatgagctgcagctttgttcttgtcccccctttgctgaataatttccaatgactcttac 444

                                                                       
Query: 245 ttcttgtattataaaaggtcaaggtgcttaatacactccagtacaatttctgcacgatag 304
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 445 ttcttgtattataaaaggtcaaggtgcttaataaactccagtacaatttctgcaagatag 504

                                                                       
Query: 305 tcctaatgtacttactggttctctctctcatttctcttattctacaaatctccattccag 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcctaatgtacttactggttctttctctcatttctcttattctacaaatctccattccag 564

                                                                       
Query: 365 caacctgactacatgcaccactgtgctctcctcctgtgaaacatattttctatccatcta 424
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 caacctgactacatgcaccactgtgctctcctcctgtggaacatattttctatccatcta 624

                                                                       
Query: 425 ataaaaacctagccacatttcagggctcaactcaattgctacttcttcatgaacactgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ataaaaacctagccacatttcagggctcaactcaattgctacttcttcatgaacactgct 684

                                                             
Query: 485 tggattctcctggggacaatgcagtttcctccccttatgctttgaaagga 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggattctcctggggacaatgcagtttcctccccttatgctttgaaagga 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_l06.g1 MSMg01no345_l06.g1 CHROMAT_FILE:
MSMg01no345_l06.g1 PHD_FILE: MSMg01no345_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:13 2005
         (559 letters)



>mm_chr2_12658389_12659347
          Length = 959

 Score =  344 bits (178), Expect = 8e-99
 Identities = 187/190 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaataatttactgaatcctcaaactccatacttttctatatataaagaagggatgggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acaataatttactgaatcctcaaactccatacttttctatatataaagaagggatgggct 330

                                                                       
Query: 61  ttcattaataatcatttatctcagttttaaagaaactggttaacaggggaaaacactttt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcattaataagcatttatctcagttttaaagaaactggttaacaggggaaaacactttt 270

                                                                       
Query: 121 aataaatactctagaacttagcagctgttgggtaaggatcatcagaccctttattttatt 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 269 aataaatactctagaacttagcagcagttgggtaaggatcatcagacccttcattttatt 210

                     
Query: 181 gactgtgact 190
           ||||||||||
Sbjct: 209 gactgtgact 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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