Query= MSMg01no345_o13.b1 MSMg01no345_o13.b1 CHROMAT_FILE:
MSMg01no345_o13.b1 PHD_FILE: MSMg01no345_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:28 2005
(570 letters)
>mm_chr2_21087307_21088276
Length = 970
Score = 988 bits (511), Expect = 0.0
Identities = 526/531 (99%)
Strand = Plus / Plus
Query: 40 ctctctcgcctctctctcctctcttcttccttctctcttatctagtggtagggcataaaa 99
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctctctcccctctctctcctctcttcttccttctctcttatctagtggtagggcataaaa 299
Query: 100 ggaggtagggggataaagggtgttaaaaagaagaatcaataaagtagcaaaacctgggtg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggaggtagggggataaagggtgttaaaaagaagaatcaataaagtagcaaaacctgggtg 359
Query: 160 ttaatcttagtgataggatgctcaatatcttgggcatcctactatccttactatcactaa 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttaatcttagtgataggatgctcaatatcttgggcatcctactatccttactatcactaa 419
Query: 220 aataagtaaataagtaaaaaagcaagtcaatcagtagaaaatgcccagatctcttacttg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aataagtaaataagtaaaaaagcaagtcaatcagtagaaaatgcccagatctcttacttg 479
Query: 280 tttatatacactgtgaggctagttttgatttgatcatgtctcaccgtccctgtcaagatg 339
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 480 ggtatatacactgtgaggctagttttgatttgatcatgtctcaccgtccttgtcaagatg 539
Query: 340 acaactgtgatgtatatgacatttgttgctcactagtgaacttggtcattattccttgga 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acaactgtgatgtatatgacatttgttgctcactagtgaacttggtcattattccttgga 599
Query: 400 ctgttttgtcaatgactggctctatgcatcctgaatttgactgacatttaaaatgttatt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctgttttgtcaatgactggctctatgcatcctgaatttgactgacatttaaaatgttatt 659
Query: 460 caaaaggctgtatgactacttgttcttgagatgaaatttccgcagggataaagtatgatg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 caaaaggctgtatgactacttgttcttgagatgaaatttccgcagggataaagtatgatg 719
Query: 520 ctaattgaaggaaatggttgttgaggaggaacccccagtatcaccagattg 570
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 720 ctaattgaaggaaatggttgttgaggaggagcccccagtatcaccagattg 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_o13.g1 MSMg01no345_o13.g1 CHROMAT_FILE:
MSMg01no345_o13.g1 PHD_FILE: MSMg01no345_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:28 2005
(430 letters)
>mm_chr2_21260495_21261326
Length = 832
Score = 694 bits (359), Expect = 0.0
Identities = 417/445 (93%), Gaps = 19/445 (4%)
Strand = Plus / Minus
Query: 1 actttgtagaccaggctggccttgaactcagaaatctgcctgcctctgcttcccaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 actttgtagaccaggctggccttgaactcagaaatctgcctgcctctgcttcccaagtgc 726
Query: 61 tgggattaaaggcgt-tcgccaccatgcctggctgtttgtaaatgttttggtttgcttta 119
|||||||||||| || | |||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 725 tgggattaaaggtgtgt-gccaccatgcctggctatttgtaaatgttttagtttgcttta 667
Query: 120 catgtgggtaagtgactgga--attaaaaa------------aaaaaaaccctccaagtt 165
|||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 666 catgtgggtaagtgactggaatattaaaaacaaacaaaaaacaaaaaaacactccaagtt 607
Query: 166 --cattcaaaagaatgattggcagaagtgcacaagaacagtcatgaaaagtgatgttcat 223
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 606 cacattcaaaagaatgattggcagaagtgcacaagaacagtcgtgaaaagtgatgttcat 547
Query: 224 tgtagtactgtttatgagaaagggactgtaccaactcagttgtccttaaatccaatactg 283
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 546 tgtagtactgtttatgagaaagggactggaccaactcagttgtccttaaatccaatactg 487
Query: 284 gggacttaaattgagttataattacctaacatagcaactcattttggtaatttatcatca 343
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gggacataaattgagttataattacctaacatagcaactcattttggtaatttatcatca 427
Query: 344 ttgttcctaaagtaagaaaaaattgaaatatattatcaattcaaaaaaatcataatgttg 403
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 426 ttgttcctaaagtaagaaaaaattgaaatatattatcaattcagaaaaatcataatgttg 367
Query: 404 ccattattttaatgacaacatattt 428
|||||||| |||||||||||||||
Sbjct: 366 tcattattt-aatgacaacatattt 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 832
Length adjustment: 9
Effective length of query: 421
Effective length of database: 823
Effective search space: 346483
Effective search space used: 346483
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
