Query= MSMg01no346_g19.b1 MSMg01no346_g19.b1 CHROMAT_FILE:
MSMg01no346_g19.b1 PHD_FILE: MSMg01no346_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:07 2005
(527 letters)
>mm_chr2_12043551_12044477
Length = 927
Score = 391 bits (202), Expect = e-113
Identities = 282/338 (83%), Gaps = 51/338 (15%)
Strand = Plus / Minus
Query: 240 ttttttttttttgagaaactcttgttgctaaatgcagactcagtaagagagagaaaa-aa 298
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 914 ttttttttttttgagaaactcttgttgctaaatgcagactcagtaagagaga-aaaagaa 856
Query: 299 a-aaagaaa-------------------------------------------aaa-aaag 313
| ||||||| ||| ||||
Sbjct: 855 agaaagaaagagagagagagagagagagagagagagagagagagagagagagaaagaaag 796
Query: 314 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa-ga---aag 369
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 795 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaag 736
Query: 370 aaagaaagctttcagctagaatcaatgcagagatacagttcttgctaaattcatttactg 429
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 735 aaagaaagctttcagctagaatcaatgcagagatgcagttcttgctaaattcatttactg 676
Query: 430 aggatgtggcttccagtatggaaattcaattttctacctattattttttattaaacgaga 489
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||
Sbjct: 675 aggatgtggcttccagtatagaaattcaattttctacccattattttttattaaacaaga 616
Query: 490 acattaataacactttgggtcttttgagactttctttg 527
|||||||||||||||||||||||||||| |||||||||
Sbjct: 615 acattaataacactttgggtcttttgaggctttctttg 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_g19.g1 MSMg01no346_g19.g1 CHROMAT_FILE:
MSMg01no346_g19.g1 PHD_FILE: MSMg01no346_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:07 2005
(555 letters)
>mm_chr2_11872860_11873814
Length = 955
Score = 1050 bits (543), Expect = 0.0
Identities = 552/555 (99%)
Strand = Plus / Plus
Query: 1 tggtataaacaaagatgggatccaaaatattttgaaggaatatttctcttaatattttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtataaacaaagatgggatccaaaatattttgaaggaatatttctcttaatattttca 260
Query: 61 aagaaagagatctgtggcacttgcagttttcttggattagttatactatgctggacgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaagagatctgtggcacttgcagttttcttggattagttatactatgctggacgtca 320
Query: 121 taagcaagattgaacatgtacttctgtccatgtgtaagatgcagctccataatgcaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagcaagattgaacatgtacttctgtccatgtgtaagatgcagctccataatgcaatct 380
Query: 181 ctgctgcatgtcctgcatgagatactgtgctattttcatcaaaatcttatagtaatgtgc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgctgcatgccctgcatgagatactgtgctattttcatcaaaatcttatagtaatgtgc 440
Query: 241 agcacctacctgtctaagttgatagtagatgatgtgatgctcagagtagacatgatatac 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 agcacctacctgtctaagttgatagtaaatgatgtgatgctcagagtagacatgatatac 500
Query: 301 caggaacctaggcttgctagggcccttagtgtgcctctttgaatctcttcatggttaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggaacctaggcttgctagggcccttagtgtgcctctttgaatctcttcatggttaagt 560
Query: 361 tctttcctattgggttttgtttaaatctaaagagaaattattacagctctgccttgcaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctttcctattgggttttgtttaaatctaaagagaaattattacagctctgccttgcaat 620
Query: 421 aatctcttcaccttcatcatgcctcactgcttttgttagtatcatagatgattgatcctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatctcttcaccttcatcatgcctcactgcttttgttagtatcatagatgattgatcctt 680
Query: 481 gactcttaatttctgtgctgtgatcattggctattacactcaagttcacttgcaaatttc 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gactcttaatttctgcgctgtgatcattggctattacactcaagttcacttgcaaatttc 740
Query: 541 aaagtttgctttata 555
|||||||||||||||
Sbjct: 741 aaagtttgctttata 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
