BAC Information

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BAC

Clone NameMSMg01-346I03
Chromosome2 (Build37)
Map Location 169,578,576 - 169,706,566
singlet/doubletdoublet
Overlap geneTshz2
Upstream geneSall4, Zfp64, LOC100043909, EG668954
Downstream geneLOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346I03.T7 (MSMg01no346_i03.b1)MSMg01-346I03.TJ (MSMg01no346_i03.g1)
ACCAG459076AG459077
length777705
length of high quality
(start - end)
247 (66 - 312)431 (74 - 504)
definitionCHROMAT_FILE: MSMg01no346_i03.b1 PHD_FILE: MSMg01no346_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:13 2005CHROMAT_FILE: MSMg01no346_i03.g1 PHD_FILE: MSMg01no346_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,706,320 - 169,706,566)(169,578,576 - 169,579,002)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTATCGAAGAGGATCCGCGGAATTC
TCACAATCTCACTTTCTCATTGCTGGGATTACAGGCATGAGCCACCACTC
CTGGTGAAATAGTATATCACGTTTGCAAGTGAAATCAGGCAAACTTTATA
AAATAACTACAGTCACCTTTGAAAAGCAAATGGCTGTTATGACTCTGAGA
CAAATACCACGTCAACAACACTAGCCATAACTATTCTAGGCTATAAGATA
TTGGTACGATTCTTATGGGTAAGTGTGTGATCATGGAGAGAAAATATGTA
CGCACACACACACTTTTTTTGTCACGCACNTCCGCAGAGAGAGAGAGAGA
GAGATATATATAGCCTGCCCACCTTTGTTGTCCCTCTCCCGCCTACTACA
TAAATTATTACTTCCCCCCATTTCCCTCTGTTTCTGCTGACCCCTCGCAT
GCCCATTTTTCTCTGTTCTTATTTTCCCCCCCTATCTATTTTGTCCTTAC
CCCCTGTTTTTCCACACACCCATCTTTTTTCCTTCTTCCCTCCTCCCCCC
CCCTCACCTCTTACCATTTTTTTCCTGTACCCCCAATTTCCCTCGTCTAT
GCCAATCTATCTTCTACCCCCCCGCCATATTTTTTTACCGCTTTTCCCCT
TCCCTCATACCTTCCGCCTTGCCCTGTCTCTCTTTCGTCTCCTCTTCCAC
TTATTCATTTGCTCTACCCGCCCCATTTTATTTCTTCCCCTTATTTCTCC
CTTTCCCACCTCAATATACCCCTTCCG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTAATAAACACATGGATGGGAACCTG
TCTCTGACTTAGCCGAGCCTGCAGACAACCTAGGTAAGACATAGTGCTCA
CGGCTTCCCAGATATATACACACTGGATCCTTGCTGCGGCCTATAGATCC
CCTTCGTTGGCCAGCATGAAAATGAGCCATTATTGTCGAATAAAAACGGT
GTCCTGGGGTTCCATAGCTCGGCTCAGCAAATTTAGACCAGAGCATTGAT
CTTCCATCGGTGTAGCCCATTTGGTGTGTGTCTCACCTTGATTTCTGCTG
CTGTCAAACACTCTAGCCAAAAGAGAAACTTAAGGAAGGAAATGGTTCAT
TTCATCGTATAGGTGACAATCGGTCTTTGGGAAACCAAAGCAAGCTTGCA
ATTCCACACAGTGTCACCTCCGACCAAGGAACGCATTTCACATCCAAAGA
AGGGCGGCAGGAGTCAGGGAGGAAGCTCATAGGCTTACTTCAGAGGCCCA
TGCTCAGCCAGGTCCTCCTGACGAGAGATAGTGCCGCCCACAATAGGCGG
GGTCTTCTTGATTTAATTAGTGTGGGTGGGTCCTCTTGCTTCTAATTCCC
ATTACGACCATCCCCGGATATGCCATGAACCCCCCAGTTTTTATCATTCC
CCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_i03.b1 MSMg01no346_i03.b1 CHROMAT_FILE:
MSMg01no346_i03.b1 PHD_FILE: MSMg01no346_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:13 2005
         (247 letters)



>mm_chr2_169706081_169706727
          Length = 647

 Score =  424 bits (219), Expect = e-123
 Identities = 240/247 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcattgctgggattacaggcatgagccaccactcctggtgaaatagtatatcacgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 486 ctcattgctgggattacaggcatgagccaccactcctggtgaaatagtatatcacatttg 427

                                                                       
Query: 61  caagtgaaatcaggcaaactttataaaataactacagtcacctttgaaaagcaaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 caagtgaaatcaggcaaactttataaaataactacagtcacctttgaaaagcaaatggct 367

                                                                       
Query: 121 gttatgactctgagacaaataccacgtcaacaacactagccataactattctaggctata 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 366 gttatgactctgagacaaataccatgtcaacaacactagccataactattctaggctata 307

                                                                       
Query: 181 agatattggtacgattcttatgggtaagtgtgtgatcatggagagaaaatatgtacgcac 240
           | |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 306 acatattgttacaattcttatgggtaagtgtgtgatcacggagagaaaatatgtacacac 247

                  
Query: 241 acacaca 247
           |||||||
Sbjct: 246 acacaca 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no346_i03.g1 MSMg01no346_i03.g1 CHROMAT_FILE:
MSMg01no346_i03.g1 PHD_FILE: MSMg01no346_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:13 2005
         (431 letters)



>mm_chr2_169578372_169579202
          Length = 831

 Score =  803 bits (415), Expect = 0.0
 Identities = 424/427 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ataaacacatggatgggaacctgtctctgacttagccgagcctgcagacaacctaggtaa 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 ataaacacatggatgggaacctgtctctgacttaaccgagcctgcagacaacctaggtaa 264

                                                                       
Query: 65  gacatagtgctcacggcttcccagatatatacacactggatccttgctgcggcctataga 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacatagtgctcacagcttcccagatatatacacactggatccttgctgcggcctataga 324

                                                                       
Query: 125 tccccttcgttggccagcatgaaaatgagccattattgtcgaataaaaacggtgtcctgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccccttcgttggccagcatgaaaatgagccattattgtcgaataaaaacggtgtcctgg 384

                                                                       
Query: 185 ggttccatagctcggctcagcaaatttagaccagagcattgatcttccatcggtgtagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggttccatagctcggctcagcaaatttagaccagagcattgatcttccatcggtgtagcc 444

                                                                       
Query: 245 catttggtgtgtgtctcaccttgatttctgctgctgtcaaacactctagccaaaagagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catttggtgtgtgtctcaccttgatttctgctgctgtcaaacactctagccaaaagagaa 504

                                                                       
Query: 305 acttaaggaaggaaatggttcatttcatcgtataggtgacaatcggtctttgggaaacca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acttaaggaaggaaatggttcatttcatcgtataggtgacaatcggtctttgggaaacca 564

                                                                       
Query: 365 aagcaagcttgcaattccacacagtgtcacctccgaccaaggaacgcatttcacatccaa 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggcaagcttgcaattccacacagtgtcacctccgaccaaggaacgcatttcacatccaa 624

                  
Query: 425 agaaggg 431
           |||||||
Sbjct: 625 agaaggg 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)