Query= MSMg01no346_o19.b1 MSMg01no346_o19.b1 CHROMAT_FILE:
MSMg01no346_o19.b1 PHD_FILE: MSMg01no346_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:44 2005
(491 letters)
>mm_chr2_180327676_180328565
Length = 890
Score = 888 bits (459), Expect = 0.0
Identities = 480/487 (98%), Gaps = 1/487 (0%)
Strand = Plus / Plus
Query: 5 gaattccacctatgtcacaatgggggagggaggagagatacccctgcctgcagtcaccct 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacctatgccagaatgggggagggaggagagatacccctgcctgcagtcaccct 264
Query: 65 gagacagtgcctgtcctgtcttaggccaaaagagccccatgatcccacttttggggacct 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagacagtgc-tgtcctgtcttaggccaaaagagccccatgatcccacttttggggacct 323
Query: 125 cagagaaaggaggccagctctaaaagactaagtagtagagataagggccaggaggtccct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagagaaaggaggccagctctaaaagactaagtagtagagataagggccaggaggtccct 383
Query: 185 ggacaacagcaaggaacaccttgtggcaggtggctcaggatagaggtgaccctagcctct 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 ggacaacagcaaggaacaccttgtggcaggtggctcaggatagaggtgaccccagcctct 443
Query: 245 cagagaagaaagctggaggtgtgttttgtcttaccctcaggctgaatcagggtctaaggg 304
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cggagaagaaagctggaggtgtgttttgtcttaccctcaggctgaatcagggtctaaggg 503
Query: 305 aaaaattaccctacctggtacccaggggcccacccagtgttccttgggaacagtgatgag 364
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaaatcaccctacctggtacccaggggcccacccagtgttccttgggaacagtgatgag 563
Query: 365 tgagggccacctgagtcccaggggattgttttctaggcatttaaaagctccaaggaagtc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgagggccacctgagtcccaggggattgttttctaggcatttaaaagctccaaggaagtc 623
Query: 425 agagagcgtcttgtccgggcctatgagctcatgctgggcttctatgggatccaacttgag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agagagcgtcttgtccgggcctatgagctcatgctgggcttctatgggatccaacttgag 683
Query: 485 gatcgga 491
|| ||||
Sbjct: 684 gaccgga 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space: 423280
Effective search space used: 423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_o19.g1 MSMg01no346_o19.g1 CHROMAT_FILE:
MSMg01no346_o19.g1 PHD_FILE: MSMg01no346_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:44 2005
(362 letters)
>mm_chr2_180476327_180477090
Length = 764
Score = 661 bits (342), Expect = 0.0
Identities = 358/364 (98%), Gaps = 2/364 (0%)
Strand = Plus / Minus
Query: 1 attatcagctcatgaaaccacaagctctacaagaaataagtgcgggaggtagaaaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attatcagctcatgaaaccacaagctctacaagaaataagtgcgggaggtagaaaaacaa 505
Query: 61 ggccagaaatggggggggggg--ttcaccttgttctggggtctgtgatgtctggactgcc 118
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggccagaaatggggggggggggtttcaccttgttctggggtctgtgatgtctggactgcc 445
Query: 119 aggcacctgccaacccaggacacatcagtagtgctgagagatccacagggcgggaaccag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggcacctgccaacccaggacacatcagtagtgctgagagatccacagggcgggaaccag 385
Query: 179 ggtctgcaaggcaggtgaggaccctggcccactgcacaccggcccagctggagtggcaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtctgcaaggcaggtgaggaccctggcccactgcacaccggcccagctggagtggcaag 325
Query: 239 cctgactcctggagagaagcagaaaccatggcttctctatggttctgaacggtgtttcta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctgactcctggagagaagcagaaaccatggcttctctatggttctgaacggtgtttcta 265
Query: 299 gcgggcctgtcttatggagacatggtctaatgtctatagacatctcacgctattgttgct 358
| ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 264 gtgggcctgtcttatggagacatggtctaatgtctatagacatcttaggttattgttgct 205
Query: 359 ggag 362
||||
Sbjct: 204 ggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 764
Length adjustment: 9
Effective length of query: 353
Effective length of database: 755
Effective search space: 266515
Effective search space used: 266515
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
