Query= MSMg01no346_p24.b1 MSMg01no346_p24.b1 CHROMAT_FILE:
MSMg01no346_p24.b1 PHD_FILE: MSMg01no346_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:50 2005
(456 letters)
>mm_chr2_160269142_160269997
Length = 856
Score = 816 bits (422), Expect = 0.0
Identities = 432/438 (98%), Gaps = 6/438 (1%)
Strand = Plus / Minus
Query: 22 ggctggcctcgaactcagagatctgcctgcctctgcctccatgtgccagcatcacctggc 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ggctggcctcgaactcagagatctgcctgcctctgcctccatgtgccagcatcacctggc 796
Query: 82 aaaaagcaaaattttaaccgctgaaccatctttccagtcccccataaatctcatattggg 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aaaaagcaaaattttaaccgctgaaccatctttccagtcccccataaatctcatattggg 736
Query: 142 atttacaccatgctggggatagaacgcaggcctctgtgcagactatagacaagcactcta 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 atttacaccatgctggggatagaacgcaggcctctgtgcagactatagacaagcactcta 676
Query: 202 ttacactgactacatcctcccaagctctctgctgttggcatttgaactaaaatcctcccc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttacactgactacatcctcccaagctctctgctgttggcatttgaactaaaatcctcccc 616
Query: 262 ttgttagaacaagcacttcattaacagcaggagaagc---ggcagtagaaatctcctgtg 318
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 615 ttgttagaacaagcacttcattaacagcaggagaagctttg---gtagaaatctcctgtg 559
Query: 319 ttagaggggcccaagacagagtagggaatcaggaatcagctgtctctgcccagggagggc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttagaggggcccaagacagagtagggaatcaggaatcagctgtctctgcccagggagggc 499
Query: 379 agatgtaggaaatgagagtgagggctggagaaggaaggaatgggaaaagtgaagacccag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agatgtaggaaatgagagtgagggctggagaaggaaggaatgggaaaagtgaagacccag 439
Query: 439 aggtgagaaatggcaacc 456
||||||||||||||||||
Sbjct: 438 aggtgagaaatggcaacc 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_p24.g1 MSMg01no346_p24.g1 CHROMAT_FILE:
MSMg01no346_p24.g1 PHD_FILE: MSMg01no346_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:50 2005
(175 letters)
>mm_chr2_160089590_160090162
Length = 573
Score = 323 bits (167), Expect = 4e-93
Identities = 173/175 (98%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 1 attgaatatttgcaagatgaatgcacctccccataaaaggaaagcatatggggaataggc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 attgaatatttgcaagatgaatgcacctccccataaaaggaaagcatatggg-aatagg- 258
Query: 61 tgaatgaggtcgaccagtgtcatggggttgggcatctctgctgagaactgagacggaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgaatgaggtcgaccagtgtcatggggttgggcatctctgctgagaactgagacggaaac 318
Query: 121 actcacctcaatcgacccaccttaaatcccaaaaggcttgcttgggtgctacccg 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 actcacctcaatcgacccaccttaaatcccaaaaggcttgcttgggtgctacccg 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 573
Length adjustment: 8
Effective length of query: 167
Effective length of database: 565
Effective search space: 94355
Effective search space used: 94355
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
