Query= MSMg01no347_a21.b1 MSMg01no347_a21.b1 CHROMAT_FILE:
MSMg01no347_a21.b1 PHD_FILE: MSMg01no347_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:54 2005
(462 letters)
>mm_chr2_114685352_114686215
Length = 864
Score = 849 bits (439), Expect = 0.0
Identities = 457/467 (97%), Gaps = 8/467 (1%)
Strand = Plus / Plus
Query: 1 tggacatgacctgttaaggagaaagaaagtttaacctggctactggcttatgtgacctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggacatgacctgttaaggagaaagaaagtttaacctggctactggcttatgtgacctcc 260
Query: 61 tctggtgaggcaaaggtgccattactgggttgggcacaggacagtgagaaaatgagccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctggtgaggcaaaggtgccattactgggttgggcacaggacagtgagaaaatgagccta 320
Query: 121 ctcctgaagatat-----taggacaagatttcaggatttagacatgccttgaccccactg 175
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctgaagatatgatattaggacaagatttcaggatttagacatgccttgaccccactg 380
Query: 176 tttctccagccctgctttcctgggtcccatggctggctggtccctcaaccaaagtaccaa 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctccagccctgctttcctgggtcccatggctggctggtccctcaaccaaagtaccaa 440
Query: 236 gtcacagatcctgtcctgagaagctaacggagactacgtacactatgaagactgagttaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcacagatcctgtcctgagaagctaacggagactacgtacactatgaagactgagttaa 500
Query: 296 aattcctcatgctgagcttcataagagacatggcttgcgcttggataagtacggggggca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattcctcatgctgagcttcataagagacatggcttgcgcttggataagtacggggggca 560
Query: 356 gtgttttccctcacataacaagaagactttgtgtgtgatgatacttcacgaacattctga 415
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 gtgttttccctcacataacaagaagactttgtgtgtgat---acttcacgaacattctga 617
Query: 416 ggatcataagatttcttagcccagtctgaaagacactctctgggaaa 462
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 618 ggatcataagatcacttagcccagtctgaaagacactctctgggaaa 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 864
Length adjustment: 10
Effective length of query: 452
Effective length of database: 854
Effective search space: 386008
Effective search space used: 386008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_a21.g1 MSMg01no347_a21.g1 CHROMAT_FILE:
MSMg01no347_a21.g1 PHD_FILE: MSMg01no347_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:54 2005
(669 letters)
>mm_chr2_114811844_114812912
Length = 1069
Score = 1180 bits (610), Expect = 0.0
Identities = 655/670 (97%), Gaps = 4/670 (0%)
Strand = Plus / Minus
Query: 1 ccctcttaatcaagagacacaggaactactacatgcccaatggctactctggctgaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 ccctcttaatcaagagacacaggaactactacatgcccaatggctactctggctgaataa 953
Query: 61 gacatgacatcagcagaaaaaatacgaaactgatcaactgactcacaagaaagctatgtt 120
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 952 gacatgacatcagcag-aaaaatatgaaactgatcaactgactcacaagaaagctatgtt 894
Query: 121 tcagcatacaagtctcatttccaaaacatttgccttgaacgtgtcaataaattgacttct 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 893 tcagcatacaagtctcatttccaaaacatttgccttgaacatgtcaataaattgacttct 834
Query: 181 aaacatttgaaatgtaaataaataaatgaaatatctaataaaaaagtcaaataaaaaata 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 833 aaacatttgaaatgtaaataaaaaaatgaaatatctaataaaaaagtcaaataaaaaata 774
Query: 241 aaattaaaaagaactctcttctaactctaaacctagacaatactattacaatatatttct 300
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 773 aaattaaaaa-aactctcttctaactctaaacctaggcaatactattacaatatatttct 715
Query: 301 ccccttcatgaatagccacattttaatgaaagccttaagttcccatgaaatttaagatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ccccttcatgaatagccacattttaatgaaagccttaagttcccatgaaatttaagatca 655
Query: 361 aattttaaatgatggaattttgaacgcagttatgtaacagaaagtgaaggaaggtgtgta 420
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 654 aattttaaatgatggaattttgaacgcagttacgtaacagaaagtgaagaaaggtgtgta 595
Query: 421 tgcacacatacacactttaaatgttctcaga-tcacatggaatgtgcagcttcttattta 479
||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||
Sbjct: 594 tgcacacatacacactttaaatgttctca-attcacatggaatgtgcaggttattattta 536
Query: 480 ttatgctcttcatcattaattttcatttttgcacatattgtttcatggaatgactctatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttatgctcttcatcattaattttcatttttgcacatattgtttcatggaatgactctatt 476
Query: 540 gacacactggtgtttttacaaaatggctcaatcatttgcctaggaatttcataaattcat 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 475 gacacactggtgtttttacaaaatggctcaatcatttgcctaggaatttcataacttcat 416
Query: 600 tctttttaatagctgaatgaatttataaaattcctaggcaaatggatggacctggagggc 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 415 tctttttaatagctgaatgaatttataaaattcctaggcaaatggatggacttggagggc 356
Query: 660 atgatcctga 669
|| |||||||
Sbjct: 355 attatcctga 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
