BAC Information

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BAC

Clone NameMSMg01-347C03
Chromosome2 (Build37)
Map Location 75,882,848 - 75,883,211
singlet/doubletsinglet
Overlap genePde11a
Upstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1
Downstream geneCyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347C03.T7 (MSMg01no347_c03.b1)MSMg01-347C03.TJ (MSMg01no347_c03.g1)
ACCAG459548AG459549
length745762
length of high quality
(start - end)
460 (50 - 509)409 (77 - 485)
definitionCHROMAT_FILE: MSMg01no347_c03.b1 PHD_FILE: MSMg01no347_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:01 2005CHROMAT_FILE: MSMg01no347_c03.g1 PHD_FILE: MSMg01no347_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGGTTTCCACTGAATGTTGCATATTATTCCAGCATTGCTA
TCGGTGTTTCCCTTATCTAAATGAAGGTCATTAAGATGGCGCATCTTCTG
GATCGCCATGGAGTTCTACCAATAGTGGAGAAAGGAAGAGGGGATATTGG
TATGGACAGTGGGCATTCCTGCCACAGGCATTTATGACTGAACTTTGCTG
TATGAATTATTATATGGGACAGTGGAAGAAGTAAAGGCTGTGAGTGATAT
TGGCCTGAGTTTAAATTTCTTTCTGCCATTCCCCCTTAAACCCGCTGGCT
TGAAGGGTCTCTCTCCTCCTTGGAACTCAATGATATGAAATGTCTTTAAA
GGGTTAAATTTAAAATGAGAGGGCACACCCCAACTGCCATAGTCAATGCA
TCAGTGGAGAATGAGAGGTGGTAGATGACCCAGCAGTAAGAAGCAGGGCT
TTCAGAGAGCAGGAATGATGAGCAGCCAGTTCTACAGCGCTGTGCTTGTA
GCTTGGAGCCCTAAGTGCGGTGTAAGGCATATGTGGTACTCACACTTGGA
GACCTGGAAACTGTCTGCTTGTGAGCCTAAGGGGCATTTATAAGTCTTCC
CCCTCCCCTCATTTTCCAAGCCTTCTTTTGCCGCATCCCCGGGTACATTC
TCTTTTTTCCCCTTTCATCCATCTACCATCCTTTTTTTTTTATCT
CCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCTTATCCGATTTGGGATAGGTAAAGATCCTT
TTCCAATCTGTTGGTGGTCTTTTTGTCTTATAAGTGGATGCTCACAGTCA
GCTATTGGATGGATCACAGGGGCCCCCAATGGAGGAGCTAGAGAAAGTAA
CCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAACAATATGAA
CTAACCAGTACCCTGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGA
TGGCCTAGTCGGCCATCACTGGAAAGAGAGGTCCATCGGACACACAAACT
TTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGGGGGAGTGGGT
GGTTAGGGGAGTGCCTTCTTTCCTTTTCCCTTTCGCTCATTCCTCCCTTT
CTTTCTCTTTCCTGTTTCCTTTTCCTTTTTTCTTTTTTTTCTCTTCTTTT
CCCCCTTTACTTTTCCTTCTTCTCCTATTTTTTTTCATCTTTTTCCACTC
TTTTCATCATTTTACCCCTTCTCATTACAACCCTAACATTTTCTCCCTCC
CTCCCGCACTCTTCCCCCCTATCCCCCTTTATTTTTTCCTCCTTCTCTTA
CTCCCTCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_c03.b1 MSMg01no347_c03.b1 CHROMAT_FILE:
MSMg01no347_c03.b1 PHD_FILE: MSMg01no347_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:01 2005
         (460 letters)



>mm_chr2_75882552_75883411
          Length = 860

 Score =  681 bits (352), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 97  ttctggatcgccatggagttctaccaatagtggagaaaggaagaggggatattggtatgg 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttctggatcgccatggagttctaccaatagtggagaaaggaagaggggatattggtatgg 601

                                                                       
Query: 157 acagtgggcattcctgccacaggcatttatgactgaactttgctgtatgaattattatat 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 acagtgggcattcctgccacaggcatttatgactgaactttgctgtatgaattattatat 541

                                                                       
Query: 217 gggacagtggaagaagtaaaggctgtgagtgatattggcctgagtttaaatttctttctg 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gggacagtggaagaagtaaaggctgtgagtgatattggcctgagtttaaatttctttctg 481

                                                                       
Query: 277 ccattcccccttaaacccgctggcttgaagggtctctctcctccttggaactcaatgata 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ccattcccccttaaacccgctggcttgaagggtctctctcctccttggaactcaatgata 421

                                                                       
Query: 337 tgaaatgtctttaaagggttaaatttaaaatgagagggcacaccccaactgccatagtca 396
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 420 tgaaatgtctttaaagggttaaatataaaatgagagggcacaccccatctgccatagtca 361

                                                                       
Query: 397 atgcatcagtggagaatgagaggtggtagatgacccagcagtaagaagcagggctttcag 456
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 360 atgcatcagtggagaatgagaggtggtagatgacccagcagtaagaggcagggctttcag 301

               
Query: 457 agag 460
           ||||
Sbjct: 300 agag 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)