BAC Information

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BAC

Clone NameMSMg01-347E03
Chromosome2 (Build37)
Map Location 151,903,814 - 151,904,243
singlet/doubletsinglet
Overlap geneScrt2
Upstream geneLOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik
Downstream geneSrxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347E03.T7 (MSMg01no347_e03.b1)MSMg01-347E03.TJ (MSMg01no347_e03.g1)
ACCAG459644AG459645
length799769
length of high quality
(start - end)
365 (80 - 444)439 (77 - 515)
definitionCHROMAT_FILE: MSMg01no347_e03.b1 PHD_FILE: MSMg01no347_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:10 2005CHROMAT_FILE: MSMg01no347_e03.g1 PHD_FILE: MSMg01no347_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACTTAATCCTCATGTCACNTATANGACTCACTTTTTCAAGAGGAGCC
GCGGAATTCTCANAATGGCAAAAAAGAAGACAGAGAAACACTTAAAAAAT
GTATAGCATCTTTAGCCATCATTAACCTGCAAATCAAAACGACTCTGAGA
GTCCATCTTACACCTGTCAGAGTGGCTAAGATCAAGTGACAGCTCATGCT
GACAAGGATGTGGAGCAAGGGGGGGACACTCCTCTGTTGCTGGTGGGACT
GCATACTTGCACAGCTATTTTGGAAATCAATATGGTGATTTCTCAGAAAA
TTTGGAATCGATCTATCTCAAGTTTTTTTTACACCACTCCCGAACATATA
CCCAAATATACCCAAAGGATGCTCCATCCTACCACAAGGACACCTGCTCA
ACTATATCCAAAGCAGCTCCATTCATAATTATCAGAAACTAAATGCAACC
TAGATGTCCCACAACTGAAGAATGGACAAATAAAATGTGGTACTTCTACA
CACTGCAGAATTACTCAGCTGTTAAAAATCATGACCTCATGATATTGTTC
TTGTAATTGTGTGCAACCCCATATATATCCCTTCATGAGTGACTAAAAGC
CATACCCCCCATTGTTTACTTATGTTCCTTGCCCTCTCCCTATAAAGCCC
AAATTATTTTGGTATAAAAGAATACTCACTTTTCCCTCTTCTTTCCGATC
CTTTATACTTTCCCGCTCTCACCTCGCGTATCCTCTCTTCGTGATTATAA
CCACCCTCCTATCTATCCTTATCCCAACCGTTGTTATAATTATACCTCG
CTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAGTGGAAATAAGCCTGTCTCCC
CCAACTTTCTTCTGCTGTTGCTTTAGACTCCTTGTGTATGAGTGTTTTGC
CTGCATTGTGTGTGTGTGCACCATGTGTGTGCCTGGTGCCTGAAGAGCTC
AGAAGAGGGCATTGGATCCCCTGGAACTGAACCCAGGTGTCCTGCAAGAG
CAATAACTGCTCTTAACTGCTGAGCCATCTCTCTAAATCCTACAACTTGA
TGTTTTGTTGTCAGCAACAGAAATGAAGCTTAGACAGCAGTTAAGAAGAA
ATGTGAGGACCCAAGGTTCAAAGCACCTCTGTAGGATAATGCTAAACTTA
TAGCTTTGGCACAAAGGACACCAAGAAGAGACTTCTGTCCCATCTTTCCC
AATAGGAGCTTACCACTTGTCCCCAAGTCACATAAATTAAAAAAGCACTC
TATTCCCAAGGGCATCGGCTACAGTATTGAAGTCAGAGTGAGAATCCCAA
TTGTTCTGAGTGGAGACAAGTTTTCCGGAAGACCTCTAAGGATGTTGTAG
CTTACCTGGGATAGCCCCTGTCTTTACCCCGATTGCAACTTTGCTTAATT
CCAAATTTCCTTTCTATTGTTTTCCCAAGTTTAAATTCCCCTTCTTGAAC
TAATATGCTCCTGAAACCTATTGCGGCCGCTTGGCAAATTTTCTCTGGTG
ACTCTCAAACACCCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_e03.g1 MSMg01no347_e03.g1 CHROMAT_FILE:
MSMg01no347_e03.g1 PHD_FILE: MSMg01no347_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:10 2005
         (439 letters)



>mm_chr2_151903405_151904243
          Length = 839

 Score =  801 bits (414), Expect = 0.0
 Identities = 426/430 (99%), Gaps = 1/430 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  taagcctgtctcccccaactttcttctgctgttgctttagactccttgtgtatgagtgtt 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 taagcctgtctcccccaactttcttctgctgttgctttagactccttgtgtatgagtgtt 780

                                                                       
Query: 71  ttgcctgcattgtgtgtgtgtgcaccatgtgtgtgcctggtgcctgaagagctcagaaga 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ttgcctgcattgtgtgtgtgtgcaccatgtgtgtgcctggtgcctgaagagctcagaaga 720

                                                                       
Query: 131 gggcattggat-cccctggaactgaacccaggtgtcctgcaagagcaataactgctctta 189
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gggcattggatccccctggaactgaacccaggtgtcctgcaagagcaataactgctctta 660

                                                                       
Query: 190 actgctgagccatctctctaaatcctacaacttgatgttttgttgtcagcaacagaaatg 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 659 actgctgagccatctctctaaatcctacaacttgatgttttgttgtcagcaactgaaatg 600

                                                                       
Query: 250 aagcttagacagcagttaagaagaaatgtgaggacccaaggttcaaagcacctctgtagg 309
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aagcttagacagcaattaagaagaaatgtgaggacccaaggttcaaagcacctctgtagg 540

                                                                       
Query: 310 ataatgctaaacttatagctttggcacaaaggacaccaagaagagacttctgtcccatct 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 539 ataatgctaaacttatagctttggcacaaaggacaccaagaagagacttctgttccatct 480

                                                                       
Query: 370 ttcccaataggagcttaccacttgtccccaagtcacataaattaaaaaagcactctattc 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttcccaataggagcttaccacttgtccccaagtcacataaattaaaaaagcactctattc 420

                     
Query: 430 ccaagggcat 439
           ||||||||||
Sbjct: 419 ccaagggcat 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)