BAC Information

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BAC

Clone NameMSMg01-347H07
Chromosome2 (Build37)
Map Location 81,883,395 - 81,883,867
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040704
Downstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347H07.T7 (MSMg01no347_h07.b1)MSMg01-347H07.TJ (MSMg01no347_h07.g1)
ACCAG459793AG459794
length749801
length of high quality
(start - end)		477 (58 - 534)156 (74 - 229)
definitionCHROMAT_FILE: MSMg01no347_h07.b1 PHD_FILE: MSMg01no347_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:26 2005CHROMAT_FILE: MSMg01no347_h07.g1 PHD_FILE: MSMg01no347_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNGGGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTCATTTTCTCTTTCAATGCTACACAAAGTATA
GAAAAAGTTTTCTTGAAAGGAAAACATGTATTTCTTACATATAATTTTTC
TGTCAAGGCTAAGCATCATTCTTTCACCATGACACACAAATATAATTTGG
TCATTTATTAATGATTTAGATATTCATGACAGTTTAATATTGCATTGAAA
GGTCAAATGAGAAAATGCCTTCTATATAATGCCATTTCATCCTAAAGGAT
GAATCCTTTACATATAGTCTAATTGCTGCTGTTGAATTCAGAACATAATT
TACCATATAATTAAGAAATGATTTACTTGCCATCACTGGGGAATTTAAAT
GTTCTAGTTAAGTGAATTTTCCATTCTCTTAAGAATTTTAAAACTCATTA
ATTTGAAATACATTACATACATCACTAACTTAGTAAACAGAATATTCTAA
TAAAAATTGGTATGTCCATACATTTAATATTGCCCTTCAGTGGTAAATTA
AGAAAACTGTATATCTATGCAGAAGTTCCATAATAACAAAAGTTTCTTAA
TAACNAAAGATGATCAATAAGTCNTTAACAGACAGAAGCAGAAGAATCCC
CTTGCCGATTTCATTTGGTTCCAAATTTCCAAAATAAAAAAAAAACTTGA
TTTTGTGGAAATTCCAATGTCCCACCGCAGGGGAAAACCTCGGGCCCCC

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTATATAGCTCTGAGCCCCATTTTTA
ATGGGGTTATTTGATTTTCTGGAGCCCACCTTCTTGAGTTTTTATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATGTATGTGTGTGTGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAG
ATAGATAGATAGATAGATAGATGGGGGGGGGGGGGGGGGGGGGGGTGGGG
GGGGGGGGGGGGGGGGAGAGAGAGAGAGAGATATATATATATAGATATAT
ATATATATATATACACACACATTTATAGAGAGATATTTTGCTATTTTTCC
TGTTTATGATTTTTACGTCTTCCGCCCTCCCCCATTTTTGTCCCCTCTTT
TATTCCTTTTTTTCTCTCCCTTCCTTTTTTCTCCCTTTCCCCCCTTTTTT
TTTTGCGTCCTCCTGGTCTCCACCCGCTTCTTGTATTTTGTTTTTCTCCC
CGTCACCTTTTTTGTTTTTTGTCTCCCCTCCTCCCGTGTTTTACTATTGC
TTTTCCCCGCGCTTATTTTTATTTTTTATTTCTCGCCCTATTTTTTCTTC
CCCCTCCCTCCTCCTCTCTTCTACTCCTTTTTCGCGCTTTTTTTTTCTAC
TTCTTTTCCCCGTTTTCTCTTTGTTCTCCACCTTCCTCTCCTCTTTTTCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_h07.b1 MSMg01no347_h07.b1 CHROMAT_FILE:
MSMg01no347_h07.b1 PHD_FILE: MSMg01no347_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:26 2005
         (477 letters)



>mm_chr2_81883191_81884067
          Length = 877

 Score =  899 bits (465), Expect = 0.0
 Identities = 471/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcattttctctttcaatgctacacaaagtatagaaaaagttttcttgaaagga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaattcttcattttctctttcaatgctacacaaagtatagaaaaagttttcttgaaagga 618

                                                                       
Query: 65  aaacatgtatttcttacatataatttttctgtcaaggctaagcatcattctttcaccatg 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaacatatatttcttacatataatttttctgtcaaggctaagcatcattctttcaccatg 558

                                                                       
Query: 125 acacacaaatataatttggtcatttattaatgatttagatattcatgacagtttaatatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acacacaaatataatttggtcatttattaatgatttagatattcatgacagtttaatatt 498

                                                                       
Query: 185 gcattgaaaggtcaaatgagaaaatgccttctatataatgccatttcatcctaaaggatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcattgaaaggtcaaatgagaaaatgccttctatataatgccatttcatcctaaaggatg 438

                                                                       
Query: 245 aatcctttacatatagtctaattgctgctgttgaattcagaacataatttaccatataat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aatcctttacatatagtctaattgctgctgttgaattcagaacataatttaccatataat 378

                                                                       
Query: 305 taagaaatgatttacttgccatcactggggaatttaaatgttctagttaagtgaattttc 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 taagaaataatttacttgccatcactggggaatttaaatgttctagttaagtgaattttc 318

                                                                       
Query: 365 cattctcttaagaattttaaaactcattaatttgaaatacattacatacatcactaactt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cattctcttaagaattttaaaactcattaatttgaaatacattacatacatcactaactt 258

                                                                
Query: 425 agtaaacagaatattctaataaaaattggtatgtccatacatttaatattgcc 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agtaaacagaatattctaataaaaattggtatgtccatacatttaatattgcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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