Query= MSMg01no347_k01.b1 MSMg01no347_k01.b1 CHROMAT_FILE:
MSMg01no347_k01.b1 PHD_FILE: MSMg01no347_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:40 2005
(472 letters)
>mm_chr2_169962225_169963095
Length = 871
Score = 866 bits (448), Expect = 0.0
Identities = 466/472 (98%), Gaps = 1/472 (0%)
Strand = Plus / Minus
Query: 1 gactattccgtgactacagaggtattccaccacacctgcctgtaatacctaaggcctgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gactattccgtgactacagaggtattccaccacacctgcctgtaatacctaaggcctgat 460
Query: 61 ttccaggaagggaatctctacttctgctctccagttcccttctgtctgtctctgagagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttccaggaagggaatctctacttctgctctccagttcccttctgtctgtctctgagagat 400
Query: 121 aagccccgagggacaaggactcattgttctgcctcctgtgtttacagccgctggcttatg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 399 aagccccgagggacaaggactcattgttctgcctcctgtgtttacagccgctggcttagg 340
Query: 181 gtgcctgggccaggaggtggggttagctcagacctgaagcctctatagttatggaaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gtgcctgggccaggaggtggggttagctcagacctgaagcctctatagttatggaaatat 280
Query: 241 gtattatttctgcagataatctggataattgcattaccattatttcttagcatgcccatg 300
|||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 279 gtatcatttctgcagataatctggataattgca-tgccattatttcttagcatgcccatg 221
Query: 301 tcccttaacatcttaatttgtcttttggcagtattggggatggaaactcgagccccttgc 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 220 tcccttaacatcttaatttgtcttttggcagtattggggatgggaactcgagccccttgc 161
Query: 361 atgctaggaagtgctgtaccactgagctacacccccaggcctgttttgctttgaaacagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 atgctaggaagtgctgtaccactgagctacacccccaggcctgttttgctttgaaacagc 101
Query: 421 aaactgcttcggcctcctaagtgttgaggattttgtgtatccagcatcataa 472
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 100 aaactgcttcggcctcctaagtgttgaggattttgcgtatccagcatcataa 49
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 871
Length adjustment: 10
Effective length of query: 462
Effective length of database: 861
Effective search space: 397782
Effective search space used: 397782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_k01.g1 MSMg01no347_k01.g1 CHROMAT_FILE:
MSMg01no347_k01.g1 PHD_FILE: MSMg01no347_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:40 2005
(220 letters)
>mm_chr2_169767030_169767649
Length = 620
Score = 364 bits (188), Expect = e-105
Identities = 191/192 (99%)
Strand = Plus / Plus
Query: 1 agaaatctgcctgcctctgcctcccgagtgcttggattaaaggcgtgtgccaccactacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaatctgcctgcctctgcctcccgagtgcttggattaaaggcgtgtgccaccactacc 260
Query: 61 cggctctttctaagccttaagttgttgttgttgtttaatgttacaggacattcagtacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 cggctctttctaagccttaagttgttgttgttgtttaatgttacaggacattcagcacat 320
Query: 121 actttttataagcacataccttttacctccagagttgttattctatttttcaacatattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttttataagcacataccttttacctccagagttgttattctatttttcaacatattt 380
Query: 181 attattattatt 192
||||||||||||
Sbjct: 381 attattattatt 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space: 128921
Effective search space used: 128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
