BAC Information

Click to search

BAC

Clone NameMSMg01-347L08
Chromosome2 (Build37)
Map Location 6,712,342 - 6,712,601
singlet/doubletsinglet
Overlap geneCugbp2
Upstream geneCdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, LOC100040659
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347L08.T7 (MSMg01no347_l08.b1)MSMg01-347L08.TJ (MSMg01no347_l08.g1)
ACCAG459984AG459985
length778883
length of high quality
(start - end)		472 (51 - 522)116 (70 - 185)
definitionCHROMAT_FILE: MSMg01no347_l08.b1 PHD_FILE: MSMg01no347_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:46 2005CHROMAT_FILE: MSMg01no347_l08.g1 PHD_FILE: MSMg01no347_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAAGGAAGTCACCAACTTTGACTATTACATTAGCATATGT
GTGTATGCCCCAATGTGTATACATGCATGAATCAGCACATTCTTTGAAGG
AAGAGAATCTAAAAACACTTTGCTAACAAGCACAAAAGAAATGTCATTTT
GTGTATCTTCTTCACAAAGTATCTAGGAAAAGCACTGATCTTGCAGTTTA
ATGAAAAATAAAAACAAAAAATGGGCAAAGATATAATTTAAAATAATGAA
TGATTGATGAAAATTCTTACACGCGTTCGCTACCGGCCAGGAAAGACGCA
ACAAACCAGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAG
CCAGAGAGCCAGAGAGCCAGAGAGCAAGAGTGCAAGAGCAAGAGAGAGAA
AAAGAACAAGAACAAGAAAGCAAGAGAGAGAAAAAGAACAAGAAAGCAAG
AGAGAGAAAAAGAACAAGAACAAGATAGCAAGAGAGCAATAGTGGCAGAG
AGCAATAGTGCAAGAGAGCTAGAAAAAGAACCAGAACCAGAAAGCTTGAG
TCAGAGAGAGAAAAAGCCCGAACAGGAGAGAGAATAATGCTGAACCAGAA
AGAGAAAAAGCCTGAACCTGAGAGAAGATAAGCTTTAACTCCAGAGAGAA
CAAGATTGCGCTACCCCGCCCCTTTTTAGGAAAAAATCCCCCCCTAAAAG
TAAAATTCCCGATTGGTTGGCGCCCCTC

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTTGTTCTAGCAGAATCATTGCAAGTAAGG
GCAGTTTTGTCCCTGGAGGACATTTACTAATGTCTGAAGGTATCTTGGGT
AGTTATAAGAGAGTAGGAGGTGTGTGGATGTTTCCGGCGTTCACTGCCTG
TTCTGCTCGCCCGTCGCCTTTCTTTCTGTGATGCTGCCCCTACTCTTCTC
TCCTTGTTTCCCCCACCTGCTTTTTCTCCTTTTTTTTTCTCATTTTTTCT
TCTTGACTCCTCCCCCCTTTTTTTTTTTCCCCTCGCTTTCTTCTGTTTTC
TCTATCTTTTATTTTTTCCCACCCTTGCCTCCTCCCCCCTTTCTTCCTTT
CTACTGTTCCCTCCCCCCCCCTTTTTCCCTCCCCTTTGTTTTCCCTCTTT
CTTCCCTCCTTCCCCCCTTCCTTTCCCCTCTTCCCTCTTTTCCTTTTTCT
CCTCTCCCCCTTTCTCCCTCCTCTCTTTTTTCCCCTCCCTTCTCCTCCCC
TTTCCCCCTCTCCTCTTCTCTTTCTTCCCCCCCTCCGCTCCTTTCCCTCC
TTCTTTTTTCCTCCTTTTTCCACCCCCCCCCCTTCCTTTCTTTCTCCCTC
TCCCCTCCCCCTTTCCCTTCTCTCCCTTTCTTCTCCCTCCCCTCTTTCTC
TCCCCCCCCCCTCCTCTTCTTATCCATTCTACTCCGCCCTCATCTCTTTC
TTCCCTCTCTTCCCTTTCTTTTCTTCCTTCCTCTCCCTCTCTCCCCTCCC
CTTTTTTTTTCCTCCCCCCTTCTCCCCCTTTCCTCTCTCCCCTTTCCCCC
CTTTCCCCTCCCCCCTTTTTCTCCCTCCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_l08.b1 MSMg01no347_l08.b1 CHROMAT_FILE:
MSMg01no347_l08.b1 PHD_FILE: MSMg01no347_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:46 2005
         (472 letters)



>mm_chr2_6712138_6713009
          Length = 872

 Score =  495 bits (256), Expect = e-144
 Identities = 259/260 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaggaagtcaccaactttgactattacattagcatatgtgtgtatgccccaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaggaagtcaccaactttgactattacattagcatatgtgtgtatgccccaat 264

                                                                       
Query: 65  gtgtatacatgcatgaatcagcacattctttgaaggaagagaatctaaaaacactttgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgtatacatgcatgaatcagcacattctttgaaggaagagaatctaaaaacactttgct 324

                                                                       
Query: 125 aacaagcacaaaagaaatgtcattttgtgtatcttcttcacaaagtatctaggaaaagca 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 aacaagcacaaaagaaatgtcattttgtctatcttcttcacaaagtatctaggaaaagca 384

                                                                       
Query: 185 ctgatcttgcagtttaatgaaaaataaaaacaaaaaatgggcaaagatataatttaaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgatcttgcagtttaatgaaaaataaaaacaaaaaatgggcaaagatataatttaaaat 444

                               
Query: 245 aatgaatgattgatgaaaat 264
           ||||||||||||||||||||
Sbjct: 445 aatgaatgattgatgaaaat 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |