BAC Information

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BAC

Clone NameMSMg01-347M19
Chromosome2 (Build37)
Map Location 29,988,019 - 29,988,414
singlet/doubletsinglet
Overlap genenone
Upstream geneSetx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114
Downstream geneTbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347M19.T7 (MSMg01no347_m19.b1)MSMg01-347M19.TJ (MSMg01no347_m19.g1)
ACCAG460054AG460055
length798950
length of high quality
(start - end)
437 (47 - 483)---
definitionCHROMAT_FILE: MSMg01no347_m19.b1 PHD_FILE: MSMg01no347_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:53 2005CHROMAT_FILE: MSMg01no347_m19.g1 PHD_FILE: MSMg01no347_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGAAATATCCGCCAAGAGGGGCGGGAATGTGCAAGGTTTAGAC
GGCAAACAGACTCGCTGGACTACCTTCAGTGAATAAAGGGGAGAGCCATC
AAGGAAAGCAAATGGCCTTTAGGTCAGGGCCCCTATACACACGTTATTGC
TACACATATTTGCACACACAGGCACACAATTTCTTCTGTAAATTATGTGT
ATGGGTGCTTTGCCTGCATGTATGTCTGTGCACCACTTACCTGCCTGGAG
GTCAGAAGAGTGTTGGATTCCTGTGGAACTGGAGTTGTAGATAGTTGTGA
GCTGGGAAATGAACTAGACCCTCAGAAAGAGTAACTAGAGCTCTTAACTT
CTGAACTATTTCTTCAGTACCCCTCCCACACACACACAATGTTTTTTTTA
ATTTAAAAAAGAGAGCTGGGGGCTGGAGAGATGGTTCAGTGGTTAAGAGC
ACTACTGCTCTTCCAAAGGTACTGAGTTCATATCCCAGCAATCACATGTT
GTTTCATAACCACCTGTTATGAGATCTGATGCCTTCTTCTGGCCTAACTG
AAAAACACTATTGCGTTCTCCTATTTTTTAACCTACTATCTCTTATTTCT
AACATATAACAATTCCTTTTTGGGGGGAATTGACCCTTTTTTCCCCCCAT
TTCCCTTGGCTTAATTCTTCCCCACTTACTTTGCTCTCTTGTTTCTTTTG
TGCCCCCCCTCCTTTCATATCATACCTGTCCTCTCTTATTTTTTCCCC
NNNNCCAATTACANNNGCNNANNCCTGNNCNNCCGCCTTGTTTCTCNACA
TTTANGNTGACACTTATTNNAATTATTCCGCGGNAATTCTTCGTACAACT
TCCATTTCTTGGNNGTTTTTTTTTGTTTGTTTTGNNNNNTTTTCNANACN
NNNNNNNCNCTTNNNNNNNCCCTTNNTTNNCCTTTNNNNNCCCTTTTNNA
ANACCGGGGGTTGTCTTGTTTTTGGGTTTTTGTTTTTTGTTTTTTTTTTT
TTTTTGTTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTTTGTTTGTGC
TATTTGAAAACTGGGNNNNNNNNNNNNNNCNCCNNNNNNNNNNNNNNNNN
NNNGGGGGGGGNNNNNNNTCTTTTNNCNNCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCCNNNNNCNCCCNCCCCCCCCCNCNCCCCN
CCCCCCCCCCCNNCCCCCCCCNCCCCCCCCCCCCCNNCNNNNNCNNNNCN
CCNCNCNNNCCCCNCCCCCCNCCCCCCCCCCCNCCNCCNNCCCCCCCCCC
CNCCCCNNNCCCCNNCCCCNNNCCCCCNCCCCCCNNCCCCCCCCCCCCCC
CNCNCCCCCCCCCCNCCCNNCCCCCNNCCNNCCNNCCCNCCCCCCCCCCC
CCCCCCCCCCNNCCCCCCNCCCCCNCCCCCCCCCCCCCNCCCCNNCCCNC
NCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCNCCCCTTTCCCNCNCCCCN
CCNNCCCCCCCCCCCCCCCCTTCCCCCCTTTGGCGCGGCATGGGGGGCGG
TTTNCNNCCCCNCCNCCNCCCCCCNNNCCCCCCCCCCNCCCCCCCCNCCT
TTCCCCCCCCCTCCCTCTTTTTTCTTCCTCCTCTCCNCNCNTCTTTCCCC
CCCCTCCCCCCTTCTTTTTTCTTCCTTTCTTCTTTCTTTTATTGTTTTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_m19.b1 MSMg01no347_m19.b1 CHROMAT_FILE:
MSMg01no347_m19.b1 PHD_FILE: MSMg01no347_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:53 2005
         (437 letters)



>mm_chr2_29988019_29988855
          Length = 837

 Score =  743 bits (384), Expect = 0.0
 Identities = 393/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgaaatatccgccaagaggggcgggaatgtgcaaggtttagacggcaaacaga 64
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaattcatgaaagagctgccaagaggggcgggaatgtgcaaggtttagacggcaaacaga 337

                                                                       
Query: 65  ctcgctggactaccttcagtgaataaaggggagagccatcaaggaaagcaaatggccttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctcgctggactaccttcagtgaataaaggggagagccatcaaggaaagcaaatggccttt 277

                                                                       
Query: 125 aggtcagggcccctatacacacgttattgctacacatatttgcacacacaggcacacaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aggtcagggcccctatacacacgttattgctacacatatttgcacacacaggcacacaat 217

                                                                       
Query: 185 ttcttctgtaaattatgtgtatgggtgctttgcctgcatgtatgtctgtgcaccacttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ttcttctgtaaattatgtgtatgggtgctttgcctgcatgtatgtctgtgcaccacttac 157

                                                                       
Query: 245 ctgcctggaggtcagaagagtgttggattcctgtggaactggagttgtagatagttgtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ctgcctggaggtcagaagagtgttggattcctgtggaactggagttgtagatagttgtga 97

                                                                       
Query: 305 gctgggaaatgaactagaccctcagaaagagtaactagagctcttaacttctgaactatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  gctgggaaatgaactagaccctcagaaagagtaactagagctcttaacttctgaactatt 37

                                               
Query: 365 tcttcagtacccctcccacacacacacaatgttttt 400
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  tcttcagtacccctcccacacacacacaatgttttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)