Query= MSMg01no348_a04.b1 MSMg01no348_a04.b1 CHROMAT_FILE:
MSMg01no348_a04.b1 PHD_FILE: MSMg01no348_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:10 2005
(542 letters)
>mm_chr2_178880698_178881639
Length = 942
Score = 913 bits (472), Expect = 0.0
Identities = 520/536 (97%), Gaps = 2/536 (0%)
Strand = Plus / Minus
Query: 8 gaattctttct-ttcgtcttggagctggacagtcagcattctgagactctctgggagcct 66
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaattctttctgtt-gtcttggagctggacagtcagcattctgagactctctgggagcct 612
Query: 67 ggagataaaggaaagcctcccgcaatgctggagattgggctactctaaccatgtgatggt 126
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 611 ggagataaaggaaaacctcccgcaatgctggagattgggctgctctaaccatgtgatggt 552
Query: 127 ttcactcagtcctcaggaaagtgtggcgcaggctatacagagaggagtgtgtggatgtaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttcactcagtcctcaggaaagtgtggcgcaggctatacagagaggagtgtgtggatgtaa 492
Query: 187 caggagccagggctgtttgattactgtttatcttcatctacaacaagcagaaaccagcag 246
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caggagccggggctgtttgattactgtttatcttcatctacaacaagcagaaaccagcag 432
Query: 247 cagtggatggtgtgttcatgagtaaaagcatttgagcaccctcaggcaatcctgttatgt 306
||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 431 cagtggagggtgtgttcatgaataaaagcaacagagcaccctcaggcaatcctgttatgt 372
Query: 307 gagtacagtaaatgcatagagtcacagcaaatgtcataaaaacacaaaagaagagagacc 366
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 371 gagtacagtaaatgcaaagagtcacagcaaatgccataaaaacacaaaagaagagagacc 312
Query: 367 cgtagagagggggtgggtgaggaaagagaaccaactgtcacacatgcaaagggcaggcac 426
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cgtagagagggggtgggttaggaaagagaaccaactgtcacacatgcaaagggcaggcac 252
Query: 427 catggtggggctttgtctccccaaagaatagcatcatgtctacaaagcacaaggaactga 486
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 catggtggagctttgtctccccaaagaatagcatcatgtctacaaagcacaaggaactga 192
Query: 487 gttcagattccagaacccacctacaggctgtgtgcacagagtctgcctgtaatccc 542
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 191 gttcagattccagaacccacctacaagctgtgtgcacagagtctgtctgtaatccc 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_a04.g1 MSMg01no348_a04.g1 CHROMAT_FILE:
MSMg01no348_a04.g1 PHD_FILE: MSMg01no348_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:10 2005
(437 letters)
>mm_chr2_178666313_178667149
Length = 837
Score = 775 bits (401), Expect = 0.0
Identities = 428/437 (97%)
Strand = Plus / Plus
Query: 1 atagccatcctgacctacatgagaccttgtctgaggaaaaaataaaaaggaagagaaaaa 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 201 atagccatcctgacctacatgggaccttgtctgaggaaaaaataaaaaggaagaaaaaaa 260
Query: 61 aacaggcctactggctatagtgacaggaaaatttatcctgttataaaattctgtgctcat 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaggcctagtggctatagtgacaggaaaatttatcctgttataaaattctgtgctcat 320
Query: 121 ctgctggatggtttgggctatagatagttttttttctttatttaagatgtgttattttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctggatggtttgggctatagatagttttttttctttatttaagatgtgttattttta 380
Query: 181 atattttaaatttatgtgtatgtgtatgggtgttagaatgcagatacacacagaaggcag 240
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 atattttaattttatgtgtatgtgtatgggtgttagaatgtagatacacacagaaggcag 440
Query: 241 aagatgatgtgggctcctgaaactggacttagagacagttgtgagctagtggacatgaga 300
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aagacgatgtgggctcctgaaactggacttagaggcagttgtgagctagtggacatgaga 500
Query: 301 gttgggaactgaaatctggtctcaaagagcagatcctgctcttaactaccaggccaccct 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgggaactgaactctggtctcaaagagcagatcctgctcttaactaccaggccaccct 560
Query: 361 tctagcccctggtttcattttcttgtttgagttctgtttgtccaaatacggaatgcggga 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tctagcccctggtttcattttcttgtttgagttctgtttgtccaaatacggagtgcggga 620
Query: 421 gaaaagtgtaaaattca 437
|||||||||||||||||
Sbjct: 621 gaaaagtgtaaaattca 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
