BAC Information

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BAC

Clone NameMSMg01-348G05
Chromosome2 (Build37)
Map Location 22,197,868 - 22,198,250
singlet/doubletsinglet
Overlap geneMyo3a
Upstream geneGpr158, LOC637235
Downstream geneLOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348G05.T7 (MSMg01no348_g05.b1)MSMg01-348G05.TJ (MSMg01no348_g05.g1)
ACCAG460496AG460497
length744771
length of high quality
(start - end)
495 (60 - 554)447 (69 - 515)
definitionCHROMAT_FILE: MSMg01no348_g05.b1 PHD_FILE: MSMg01no348_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:40 2005CHROMAT_FILE: MSMg01no348_g05.g1 PHD_FILE: MSMg01no348_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCA
AATAGCAAATTCAAATTGCCAAGAAACAATTAAATGGTCAACATTCTTAG
TCATCGGGGAGATGCAAATCAAAACTACTTTGAGATTTCATCTTAAATTC
ATAAGAATGGCTAAGTTCAAAAACACAAGTAACAACTCATGTTGGTAAAG
ATGTGAAGTGAAGGAAACCTTCACCCATTGCTGGTGGGAGTGCAAAGCCA
CTACAGAGATCAGTGCATTGATTCCTCAGGAAGATAAGAATTGAGCTACC
TCTAGATCTAGTTATATCATTCTTGAACATGTATCTAAAGAACAGACCAT
CTGACTAAAGAAACACTTGCTTAACCATGTTCGTTGCTATCCTATTTTTT
TTGTTTGTAATTCTTTTTTTTTAATTAGGTATTTTCCTCGTTTACATTTT
CAATGCTATCCCAAAAGCCCCCCATACCCACCCACCCCCAATCCCCTACC
CACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTTAATAGCCAGAAATT
GGGGGAAAAACAGATTCCCCTTAACAGATATATGGATAACAAAAATGTGG
TACTTTTATCTCAAGGAGCAAAATTCAGCTGCTTATTATGTAATCACAAC
CATTCCTGGCCATTGACTAAACCTATACCAATTCCCCCTCCTTGCCCCTT
TTCCCTTTTATAAGAATACCTCGCCCTCGTTATTTCTTTCCTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCCCTACCCTCTGAAACTGCAAGATCTGCTC
CACTTATGCCCAAAGCTAAAGATAACTTTTATCTAGTATGTCCCTTTTGA
AGTCTTCTGATTTTTTGAGAGGTAAGAAATTTAAGTCTAGAACATTCAGA
AGCAAGTCCGTTCCCCCCCCCCCCCGCAATGGGGACACAGCTCAAGGGTA
AGTGCTTGTCTGTTATGCATAAAGCCTGAGATCTGATCCTTAGCCCTGAA
AAAGAAAATGTAAACTTAAGACAAAGGCAGGAACTTAGATGAGAGATAAA
TACCAGGCTTTAGGAGAGATTAAGGAGATTTTAAGTTTATATTTTAGGGT
GACCCTTGGCAGAAAGAAATACAGCAAAGCACACATGCGCATTCTCATAG
CTGCAAAGCCTAGAAAAGGAGGAGAATCTACTTTCCAGAGTTGCTACATC
ATTAGACTTAAAGCCCTAGTTTCAATAGGAAAAACACATTTTAAAGGCGA
ACCAAGGACATGGCCCATATTGGCAAAAAAAAAAAAAATATAATAAGCCC
ATAAAAAGCATGCCCGGATAAAGAATTATTTCGACATGGTCCAAGAAACT
AACCCAAGAACCGGAAATATCTTGTAGCCCCAAAGGAAATTTGTAAAAAA
ATTTATAACTTCCGGGCAAAAAATACTCTTCGGGAACAGCGATATTTCTT
TTTGTTCCTACTTTTCTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_g05.g1 MSMg01no348_g05.g1 CHROMAT_FILE:
MSMg01no348_g05.g1 PHD_FILE: MSMg01no348_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:40 2005
         (447 letters)



>mm_chr2_22197740_22198584
          Length = 845

 Score =  594 bits (307), Expect = e-174
 Identities = 369/395 (93%), Gaps = 15/395 (3%)
 Strand = Plus / Minus

                                                                       
Query: 56  aacttttatctagtatgtcccttttgaagtcttctgattttttgagaggtaagaaattta 115
           ||||||||||||||||||||||||||||       |||| ||||||||||||||||||||
Sbjct: 511 aacttttatctagtatgtcccttttgaa-------gattctttgagaggtaagaaattta 459

                                                                       
Query: 116 agtctagaacattcagaagcaagtccgttcc-c-ccccccccccgcaatggggacacagc 173
           ||||||||||||||||||||||||||   || | ||||| ||||  || |||||||||||
Sbjct: 458 agtctagaacattcagaagcaagtcc---cctctccccctcccc-aaacggggacacagc 403

                                                                       
Query: 174 tcaagggtaagtgcttgtctgttatgcataaagcctgagatctgatccttagccctgaaa 233
           |||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||
Sbjct: 402 tcaatggtaagtgcttgtctgttatgtataaggcctgagatctgatccttacccctgaaa 343

                                                                       
Query: 234 aagaaaatgtaaact-taagacaaaggcaggaacttagatgagagataaataccaggctt 292
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aagaaaatgtaaa-tgtaagacaaaggcaggaacttagatgagagataaataccaggctt 284

                                                                       
Query: 293 taggagagattaaggagattttaagtttatattttagggtgacccttggcagaaagaaat 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 taggagagattaaggagattttaagtttatattttagggtgacccttggcagaaagaaat 224

                                                                       
Query: 353 acagcaaagcacacatgcgcattctcatagctgcaaagcctagaaaaggaggagaatcta 412
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 223 atagcaaagcacacatgcgcattctcatagctgcaaagcctagaaaaggaagagaatcta 164

                                              
Query: 413 ctttccagagttgctacatcattagacttaaagcc 447
           |||||||||||||||||||||||||||||| ||||
Sbjct: 163 ctttccagagttgctacatcattagacttagagcc 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 845
Length adjustment: 10
Effective length of query: 437
Effective length of database: 835
Effective search space:   364895
Effective search space used:   364895
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)