BAC Information

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BAC

Clone NameMSMg01-348H17
Chromosome2 (Build37)
Map Location 146,551,573 - 146,747,028
singlet/doubletdoublet
Overlap geneLOC668918, Gm114
Upstream geneLOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneXrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348H17.T7 (MSMg01no348_h17.b1)MSMg01-348H17.TJ (MSMg01no348_h17.g1)
ACCAG460568AG460569
length754762
length of high quality
(start - end)		501 (37 - 537)445 (68 - 512)
definitionCHROMAT_FILE: MSMg01no348_h17.b1 PHD_FILE: MSMg01no348_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:47 2005CHROMAT_FILE: MSMg01no348_h17.g1 PHD_FILE: MSMg01no348_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,551,573 - 146,552,070)(146,746,584 - 146,747,028)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAG
TGTACCCCTGGCCTGGATCTCACTGAGATCCACTAGCCTCTGCTTCTTCA
ATGCTGGGATTAAAGGTGTGTGTGACACAATTGGAGCCTTTCTTCCCTAC
CTGATATTGTTCTGCAAACCTGCTGGTGGATTTTCCCCCCCTCCCCCAGG
CCCTCACTGGATGCCTCCTATTCTTAAGCCCATTTTGCAGAGTCACCCAG
GCCCAGAGAATAACCTCAAACCTCTGGTTTCTAAGTGCCATCTACTGAGT
AGAGAGAGTCCCAGTCCAGACCTAGAGAGCCACTGGCTTCTCAAATGCTG
TGTCTTGAGCACACCCCCTTGGTTTTTGGTATGCCTAAGAGTCCCATTCC
CTAGGACCTTCTTCCTTTTTTCTATAACTGTCCCTCCTCCTCAAGCCCAC
TACAATGGCAGACATGGCGTGCAAGCCTGTAGCTCCATGGACCAAGTGTT
TTCAATAACACTATGAGGCTCAGTCTTCACAGTATCTGTTCACAGAAGAC
GGGGCAGAAATTTCGATTATCCNAGCCTCCTTTAGGGCTCTCAGACCACA
GTGACACTTGAGTCACTGACGATCACTTGTGAGCAGTCACGCCTCAACCA
CTTATCTGAATGGGGAAAATGGCTGTGGAAAGACCCCCTTGGCCCTGTTC
AATTGAAAGATGGATCCCCCCCGGGTCCCTGAAATGAACCATGGGTCCTG
AAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGACTACTGGCTTTTGTTGAGTAGTATCACAG
ACAAATTTTACTGGAGAGAGCCACCAGCTCTGAGAACTCCTGATAAAATA
GTTAAATGAAGCCAACGCAACTTGCTTGTTTTGATATCAAATTTCCTGGC
CATAAATCCAAGAATGTAAATAAAACCACAGCAAAAATCAGTGCCCTGGG
AAAATAAACTGGTTGTGACTATCTCAAGCCTGACACCCGACGGTGGAACT
GCTGTATGTGAAGCCACTGTGAAGTTTGTATACCCGGTTTTGTTTGCTAC
ACAAAAAAAACGATTGTAGAAAGGACAAACACATACATAGTTAAACAGTA
TTTTTCTTTTGACAGGCTCTCTTACAAAACCTATGTTTTGGTAGCTACCT
CATCCTTATTGTACAGCCCCCTGGGTGGTCCCTTCCAGGGGGCCACTTGA
AGGGAGCACAATGCCCAGAAGGAGAGAAGGAGGGGACAGCAACCCAAAGG
CCCACAGAGCAGGGCGGTCTGCTGCAAGCTGAAAACAAAGGTCAACAAAC
ATGGCTGCTTCTCTTTACCCACGAAAAAAGGGTCCTTTCCTTTTCCTGGA
AACACTGTGATTAACTGAAAGCCCCAAATAAGGGTTACCTTTTTGGAGGG
GCCTCCCCCGGGGCTAAGCCCCCCCTTTTGTTTCTAAAATTGTCAAGAAA
AACCCCGTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_h17.b1 MSMg01no348_h17.b1 CHROMAT_FILE:
MSMg01no348_h17.b1 PHD_FILE: MSMg01no348_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:47 2005
         (501 letters)



>mm_chr2_146551370_146552270
          Length = 901

 Score =  955 bits (494), Expect = 0.0
 Identities = 497/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacagtgtacccctggcctggatctcactgagatccactagcctctgcttcttc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacagtgtagccctggcctggatctcactgagatccactagcctctgcttcttc 263

                                                                       
Query: 64  aatgctgggattaaaggtgtgtgtgacacaattggagcctttcttccctacctgatattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgctgggattaaaggtgtgtgtgacacaattggagcctttcttccctacctgatattg 323

                                                                       
Query: 124 ttctgcaaacctgctggtggattttccccccctcccccaggccctcactggatgcctcct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctgcaaacctgctggtggattttccccccctcccccaggccctcactggatgcctcct 383

                                                                       
Query: 184 attcttaagcccattttgcagagtcacccaggcccagagaataacctcaaacctctggtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attcttaagcccattttgcagagtcacccaggcccagagaataacctcaaacctctggtt 443

                                                                       
Query: 244 tctaagtgccatctactgagtagagagagtcccagtccagacctagagagccactggctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctaagtgccatctactgagtagagagagtcccagtccagacctagagagccactggctt 503

                                                                       
Query: 304 ctcaaatgctgtgtcttgagcacacccccttggtttttggtatgcctaagagtcccattc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcaaatgctgtgtcttgagcacacccccttggtttttggtatgcctaagagtcccattc 563

                                                                       
Query: 364 cctaggaccttcttccttttttctataactgtccctcctcctcaagcccactacaatggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctaggaccttcttccttttttctataactgtccctcctcctcaagcccactacaatggc 623

                                                                       
Query: 424 agacatggcgtgcaagcctgtagctccatggaccaagtgttttcaataacactatgaggc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agacatggcgtgcaagcctgtagctccatggaccaagtgttttcaataacactatgaggc 683

                             
Query: 484 tcagtcttcacagtatct 501
           ||||||||||||||||||
Sbjct: 684 tcagtcttcacagtatct 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no348_h17.g1 MSMg01no348_h17.g1 CHROMAT_FILE:
MSMg01no348_h17.g1 PHD_FILE: MSMg01no348_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:47 2005
         (445 letters)



>mm_chr2_146746384_146747228
          Length = 845

 Score =  861 bits (445), Expect = 0.0
 Identities = 445/445 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagactactggcttttgttgagtagtatcacagacaaattttactggagagagccaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cagactactggcttttgttgagtagtatcacagacaaattttactggagagagccaccag 586

                                                                       
Query: 61  ctctgagaactcctgataaaatagttaaatgaagccaacgcaacttgcttgttttgatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ctctgagaactcctgataaaatagttaaatgaagccaacgcaacttgcttgttttgatat 526

                                                                       
Query: 121 caaatttcctggccataaatccaagaatgtaaataaaaccacagcaaaaatcagtgccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 caaatttcctggccataaatccaagaatgtaaataaaaccacagcaaaaatcagtgccct 466

                                                                       
Query: 181 gggaaaataaactggttgtgactatctcaagcctgacacccgacggtggaactgctgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gggaaaataaactggttgtgactatctcaagcctgacacccgacggtggaactgctgtat 406

                                                                       
Query: 241 gtgaagccactgtgaagtttgtatacccggttttgtttgctacacaaaaaaaacgattgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gtgaagccactgtgaagtttgtatacccggttttgtttgctacacaaaaaaaacgattgt 346

                                                                       
Query: 301 agaaaggacaaacacatacatagttaaacagtatttttcttttgacaggctctcttacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agaaaggacaaacacatacatagttaaacagtatttttcttttgacaggctctcttacaa 286

                                                                       
Query: 361 aacctatgttttggtagctacctcatccttattgtacagccccctgggtggtcccttcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aacctatgttttggtagctacctcatccttattgtacagccccctgggtggtcccttcca 226

                                    
Query: 421 gggggccacttgaagggagcacaat 445
           |||||||||||||||||||||||||
Sbjct: 225 gggggccacttgaagggagcacaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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