BAC Information

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BAC

Clone NameMSMg01-348L07
Chromosome2 (Build37)
Map Location 28,777,996 - 28,778,414
singlet/doubletsinglet
Overlap genenone
Upstream geneCol5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1
Downstream geneLOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348L07.T7 (MSMg01no348_l07.b1)MSMg01-348L07.TJ (MSMg01no348_l07.g1)
ACCAG460738AG460739
length1,067753
length of high quality
(start - end)
---419 (69 - 487)
definitionCHROMAT_FILE: MSMg01no348_l07.b1 PHD_FILE: MSMg01no348_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:05 2005CHROMAT_FILE: MSMg01no348_l07.g1 PHD_FILE: MSMg01no348_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCGGCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATNNNNNNTT
CCNNTATTTTCCNANNANNNNATCCNNCGNNAATTTCTTTTTGCTTTAAN
NTGAAANNNCAAAAANTATTGNNNNNCTGNNNNCCACANNNAATGGCTTG
AATTCATTANNNNATAACGNNAANNGNNAACCCTGGNAATAAAATGACTT
GGAATNGAATATTGNAAAAATAAAAAAAATTGGNCCCTTTTGTGNNNNNT
TAAANNNNNNNNCCCNNNNAAATTTTTTTTTNNNAANNAAAAANAANNNN
NNNTTAAAAAAAAATTTTGAAAAAAAAAAAAAAAAANNTTTTCTTNNNTT
ATCCTCTAAAAANNAANNNNNCNNNATTNAAACNNAAAAAAAAAAAANNN
NCCCTCTTNNNAAACCCCTTTTNCCTTCCCNTNNNNANNCCCTTCCCCTT
CTTCTTCTTTCGTGCTGCTCTTGCGTTTCTTCTCTCTTTNNNNNNNNNNN
NTCGGNNNNNNTNNNNNNATTGTGCNTTTCCCCCCCCTCNTCNNNNNNCN
CNNNTNCATGCTGGTGNCNCNNCCTCTCTCTCCCGCGCTCTTCGCGGCCN
NNTTCCCANTNNNNNNNNNNNNCNNCNNCCNNTNNNNNNNNNNNTCNNNT
TTCNTNNNNNANACNNNNANACACTACAATAAAAATCACACNCCTCTCCT
CTTCTCCTCGCCGCCTCGGGCTGCCTTGCNNNCCCCNNCNNNNNNNTTCC
CCNNNNNCNNNCCNNNNNACGGGTTACTNNNAANNNNNNNNNNNNNCNNN
NNNNNTCNNNNNNNNNNNTTTTCTCATTNTATNAACCTCTCTATTTTCGC
TGATCTGATGGGGGGGGGGGGGTGTTNNNCCCCCTNNNTCCCCCCNCCCC
TTTTANTTNCCNANTANAANNNNNNNCNTTNATTATACCCCCTCACTTTT
TNTNATATTTTCCANTCTCACNACNACTCTTTTTTTTTTNNCNNNNANAN
ATTNTAATTATTTNTTTNTTCTTTTATTTTCCTCTACTTTTCTCCCCCTC
TGTCCTGCGTCGGTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTTCCTTAGTCTTGGTTAAATAGAGGGGTCA
AGGCCAGCCTGAGCTACATGAGACCTTGTCTCAAGGAAAAAACTATTCTC
GAGTTATTGGAGGTCAGGAATATGAGTTGTGCTAGTGGATTTAGGAACTA
GACTGCAGGCAGCAGGGGCTCAGCACAAGAGGAGATGGGACCCCGCATGC
TTGAGGTCCCTTCTGGCCGTGCTGCTGAGTGGAACTCCAACCCCCACAGC
TTCCCTTGAAGGCTCCAGGTGGTTCCCTGACCTCTTCGTTCTTTGTAAGT
CCTTCCTTCAGGGCTCCCCCTTAACACTCTGAGACCACAGGCCTGGCCCT
TCCTGTCCTTCCTGATCAGCTTGGCATCACCTACCCACACCTCAGAAGGT
AAAGCAAAAAACTGTAAGCAGCCCAGGGTGGACGCAGACCTCATTCCTTC
CTGTGGTTCCTACAGACTGTGTACACGTACCATGGTCCATAAACCCAGGT
GAGGAAGAATGCTCCCGAATTCTAACTGGTGATGGTGTGGATAGCCCCCA
CAAGGGCCCCTGGTATTCTTTTTTGACCCCCGCACTCACCCATACTACCT
GCGGAAAGACCTTGTTTGGACGGTAAGCATCCCCTTCTCTATTTTTGCTC
CCCCCCCTCCCCCACTTTTCCTTTTATCCCTGCGTTCCTACTCCTCCTTT
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_l07.g1 MSMg01no348_l07.g1 CHROMAT_FILE:
MSMg01no348_l07.g1 PHD_FILE: MSMg01no348_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:05 2005
         (419 letters)



>mm_chr2_28777796_28778614
          Length = 819

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccttagtcttggttaaatagaggggtcaaggccagcctgagctacatgagaccttg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttccttactcttggttaaatagaggggtcaaggccagcctgagctacatgagaccttg 260

                                                                       
Query: 61  tctcaaggaaaaaactattctcgagttattggaggtcaggaatatgagttgtgctagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcaaggaaaaaactattctcgagttattggaggtcaggaatatgagttgtgctagtgg 320

                                                                       
Query: 121 atttaggaactagactgcaggcagcaggggctcagcacaagaggagatgggaccccgcat 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttagaaactagactgcaggcagcaggggctcagcacaagaggagatgggaccccgcat 380

                                                                       
Query: 181 gcttgaggtcccttctggccgtgctgctgagtggaactccaacccccacagcttcccttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgaggtcccttctggccgtgctgctgagtggaactccaacccccacagcttcccttg 440

                                                                       
Query: 241 aaggctccaggtggttccctgacctcttcgttctttgtaagtccttccttcagggctccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggctccaggtggttccctgacctcttcgttctttgtaagtccttccttcagggctccc 500

                                                                       
Query: 301 ccttaacactctgagaccacaggcctggcccttcctgtccttcctgatcagcttggcatc 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ccttaacactctgagaccacaggcctggcccttcctgcccttcctgatcagcttggcatc 560

                                                                      
Query: 361 acctacccacacctcagaaggtaaagcaaaaaactgtaagcagcccagggtggacgcag 419
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 acctacccacacctcagaaggtaaagcaaaaaactgtaagcagtccagggtggacgcag 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)