BAC Information

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BAC

Clone NameMSMg01-348M04
Chromosome2 (Build37)
Map Location 111,983,441 - 111,983,745
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317
Downstream geneOlfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348M04.T7 (MSMg01no348_m04.b1)MSMg01-348M04.TJ (MSMg01no348_m04.g1)
ACCAG460780AG460781
length929731
length of high quality
(start - end)
---305 (73 - 377)
definitionCHROMAT_FILE: MSMg01no348_m04.b1 PHD_FILE: MSMg01no348_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:10 2005CHROMAT_FILE: MSMg01no348_m04.g1 PHD_FILE: MSMg01no348_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAGAAGAAAACGTCACAGCCATTNTGAAGAACAGAAAGAAGGAGCGGGA
AAAAAAAATAATGGTNTNNNGGGGAGGAGACACCGAGNACACCCCAAAAA
AAATGGGGGGGGGGGGGAAAAAGAAACCCCGTTTTCCCCCAAAAGAGAGG
GCGCCGCAAAAAAAAAACCATTTTTCCCCCAAAAAAAAGAAGGGGGGGGG
AGAAAAAACCACCGGGACAAAAAAGAGAGGGCAAGTATTCTAAAATAAAA
AACTCGGGACAGAGAGGGGTAAAAGCAAAAAAGCAATCCGGGGAGAATGG
GAGAACCGCCTAAACCAAAATTAAACAAGGAAGGGGGAGGGGATCCCGGC
AAAAAGCACAAGTAACTAAAGGGCACCGAACGACGCGGGAACAGAAGGCG
CCGTGAAGTGAGGGCGGCCGTAAAGAAAAAAACAAAACAAACCGTACACA
CCACACACCTTTTCGCGCTCTCCGAGAGGAAGACGAAGGAGGGGGAGATG
AATAACGTATAAAACACGGAGTACACCAACCTCAACCCAAACAAGCGGTG
TTAAATAGCAACTATCCACGTCCGCGAGACCAGCCCAATGCCAACAAAAC
CCAAAGAAGCGCGACAACGCCAACGCGAGACGACAGTACAAACAGACAAA
CCACAACAAACATAAACACACCGGCCGCCGCGAACAACTACCAAGCCACC
GACCACCACGTAAATACCCCTATAAAGATACGACGCCACCCACAGCCTGA
ATATGCATCGCCAATTTTTACACGAAACGCCCATAGACGGCCGAACTGCA
ATAAGCGACGACAGCAAAAACTAACAAAAGCCGAATTCGCGATACGCCAA
ATATAAACAAAAAGAATACGAGCGAGAAACACCCCCCATAATCTATTTTC
CCAGATATAAAACACATCCCCGCAAATAN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGAATTCATCCAGCTAAAGATCTTTAT
TTTGTATATTCCTGTTGCTGTACAGATACTGAGCATTTCACAAGGCATGA
ATTAAGGTGGTTGTGCAGATTAGAAAGAGCTATCTCTGTCTCTGAGGACC
AGTGCCAAAGAGAAGTTTCCATCATTTGTGACGATAACAAAGCATGTTCA
GTGTGTGAGATTTCAGCAGTTGTTGTCACTTTCATATGGCATCTGACAGA
AATCATATTTTAGGTTCGATTTACTGCTTTTCAGTACTTTCAGAAACCAG
AAATTCTTTACCAAAACATGATCAGGTCTGCATAGAATACTTGAAGAAGC
ACTGCACAGTAGATATTTAAAACATTAAGTTGAAGAGACTTTTCAAATAG
TTTTTTTGTAAATTAAAAATATTTAACAAAATATATCTAATTAAGCTACA
ACTACATTATTTATTTCTTCCATTTTCTCCTTTGTATCCCTCTCATGTCT
GACAACTCTTCCATACCAAATTCAAGGGTTCATTTCTTTTACTATTTTCA
CCTTGCACTATAACTTATACCCCCACCCCCACCTGTCTTACATACCATAT
AAAAATGTACTTACATACCTGCTCGACCCTAATTCCATCTTGCTTTGCCT
TGTATATTTCGGCATAATGCACATCTACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_m04.g1 MSMg01no348_m04.g1 CHROMAT_FILE:
MSMg01no348_m04.g1 PHD_FILE: MSMg01no348_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:10 2005
         (305 letters)



>mm_chr2_111983241_111983945
          Length = 705

 Score =  574 bits (297), Expect = e-168
 Identities = 303/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaattcatccagctaaagatctttattttgtatattcctgttgctgtacagatactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgaattcatccagctaaagatctttattttgtatattcctgttgctgtacagatactga 446

                                                                       
Query: 61  gcatttcacaaggcatgaattaaggtggttgtgcagattagaaagagctatctctgtctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcatttcacaaggcatgaattaaggtggttgtgcagattagaaagagctatctctgtctc 386

                                                                       
Query: 121 tgaggaccagtgccaaagagaagtttccatcatttgtgacgataacaaagcatgttcagt 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 tgaggaccagtgccaaagagaagtttccatcatttgtgatgataacaaagcatgttcagt 326

                                                                       
Query: 181 gtgtgagatttcagcagttgttgtcactttcatatggcatctgacagaaatcatatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtgagatttcagcagttgttgtcactttcatatggcatctgacagaaatcatatttta 266

                                                                       
Query: 241 ggttcgatttactgcttttcagtactttcagaaaccagaaattctttaccaaaacatgat 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 ggttcgatttactgcttttcagtactttcagaaaccagaaattctttagcaaaacatgat 206

                
Query: 301 caggt 305
           |||||
Sbjct: 205 caggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)